Gene Information

Name : HPKB_0798 (HPKB_0798)
Accession : YP_005762306.1
Strain : Helicobacter pylori 52
Genome accession: NC_017354
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein D
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 835761 - 836384 bp
Length : 624 bp
Strand : +
Note : Candidate starts by CONSORF: 835722,835734,835743,835761

DNA sequence : 
TTGATCAACAATAATAGTAATAAAAAAATAAGAGACTTTTTTTTGAAAGTTCTCTTAAGTTTCGTTGTTTTCAGTTCGTA
TGGGTTGGCAAATGATGATAATCAAGCGAAAAAAGAAGCGCTAGAAAAAGAAAAAAACACTCCTAGTGGGCGTGTTTATA
CGAATTTAGATTTTGATAGTTTCAAGGCGACTATCAAAAATTTGCAAGACAAGAAAGTAACTTTCAAAGAAGTCAATCCC
GATATTATCAAAAATGAAGTTTTTGATTTCGTGATTGTCAATAGAGTCCTTAAAAAAATAAAGGATTTGAAGCATTACGA
TCCCATTATTGAAAAAATCTTTGATGAAAAGGGTAAAGAAATGGGATTGAATGTGGAATTGCAGATCAATCCTGAAGTGA
AAGACTTTTTTACTTTCAAAAGCATCAGCACGACCAACAAACAACGCTGCTTCCTGTCATTGCGCGGAGAAACAAGAGAA
ATTCTATGCGATGATAAGCTGTATAATGTTTTATTGGCCGTATTCAATTCTTATGACCCTAATAATCTTTTGAAACATAT
TAGTGCTATAGAGTCTCTCAAAAAAATCTTTTATACGATTACATGTGAAGCGGTATATCTATAA

Protein sequence : 
MINNNSNKKIRDFFLKVLLSFVVFSSYGLANDDNQAKKEALEKEKNTPSGRVYTNLDFDSFKATIKNLQDKKVTFKEVNP
DIIKNEVFDFVIVNRVLKKIKDLKHYDPIIEKIFDEKGKEMGLNVELQINPEVKDFFTFKSISTTNKQRCFLSLRGETRE
ILCDDKLYNVLLAVFNSYDPNNLLKHISAIESLKKIFYTITCEAVYL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HP0545 BAD13797.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-81 99
HP0545 BAD14070.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-81 99
HP0545 BAD13961.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-81 99
cagD YP_005779048.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-81 99
HP0545 BAD13906.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-80 99
HP0545 BAD13851.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-81 98
cagD YP_005774526.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-80 98
HP0545 BAD13824.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-79 97
cagD YP_005775745.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-79 96
HP0545 BAD13878.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-79 96
cag24 AAR03879.1 Cag24 Virulence cag PAI Protein 8e-80 95
HP0545 BAD14016.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-78 95
HP0545 BAD13933.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-79 95
HP0545 BAD13988.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-77 95
cag24 AAR03937.1 Cag24 Virulence cag PAI Protein 2e-77 95
cagD YP_005777286.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-77 94
HP0545 BAD14043.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-77 94
cag24 AAR03907.1 Cag24 Virulence cag PAI Protein 1e-77 94
cagD YP_003728719.1 cag pathogenicity island protein D Virulence cag PAI Protein 1e-76 94
cagD NP_223211.1 cag island protein Virulence cag PAI Protein 2e-75 94
cagD AAF80210.1 CagD Virulence cag PAI Protein 6e-76 94
HP0545 NP_207341.1 cag pathogenicity island protein (cag24) Virulence cag PAI Protein 2e-78 93
cag24 AAR03968.1 Cag24 Virulence cag PAI Protein 6e-77 93

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HPKB_0798 YP_005762306.1 cag pathogenicity island protein D VFG0304 Protein 8e-79 93