|
Name : hom (HPKB_0524) Accession : YP_005762040.1 Strain : Helicobacter pylori 52 Genome accession: NC_017354 Putative virulence/resistance : Unknown Product : homoserine dehydrogenase Function : - COG functional category : - COG ID : - EC number : - Position : 540061 - 541326 bp Length : 1266 bp Strand : - Note : Consensus COG by CONSORF: COG0460 DNA sequence : ATGAAAAAAAGATTGAATATAGGGCTTGTGGGTTTAGGGTGTGTGGGGAGCGCGGTCGCTAAAATCTTACAAGAAAATCA AGAAATCATTAAAGACAGAGCCGGTGTGGAAATTGGTATTAAAAAAGCGGTGGTGCGAGATGTGAAAAAGCGCAAAGGCT ATTCTTTTGAAATCAGTAATGATTTAGAAAGCCTGATAGAAGATGAAGAGATTGATATTATCGTGGAGCTTATGGGTGGG GTGGAAGCGCCTTATCTTTTAGCTAAAAAAACTTTAGCCAAACAAAAAGCCTTCGTTACAGCCAATAAAGCCATGTTAGC GTATCACCGCTATGAATTAGAGCAAATCGCTAAAAACACCCCCATAGGCTTTGAAGCGAGCGTGTGTGGGGGTATCCCTA TTATCAAGGCTTTAAAAGACGGCTTGAGCGCTAATCACATCCTTTCTTTTAAAGGGATTTTAAACGGCACCAGCAATTAC ATTTTAAGCCAGATGTTTAAAAATCAAGCGAGCTTTAAGGACGCTTTGAAAGACGCGCAACATTTAGGCTATGCGGAATT AAACCCTGAATTTGACATTAAGGGCATTGATGCGGCGCACAAATTATTGATTTTAGCGTCTTTAGCCTATGGCATTGATG CGAAATTAGAAGAAATTTTAATTGAAGGCATTGAAAAAATAGAGCCAGACGACATGGAATTTGCTAAAGAATTTGGTTAT AGCATCAAACTTTTAGGCATCGCTAAAAAACACCCAGATTGCATTGAATTAAGAGTGCATCCAAGCATGATTAAAAATGA ATGCATGCTCTCTAAAGTGGATGGGGTGATGAACGCTATAAGCGTTATAGGGGATAAAGTGGGCGAGACTTTGTATTATG GGGCTGGGGCTGGGGGAGAGCCTACCGCAAGCGCAGTCATTAGCGATATTATAGAAATCGCAAGGAAAAAAAGCTCTCTA ATGCTAGGCTTTGAAACTCCCCAAAAACTCCCCCTAAAACCCAAAGAAGAAATCCAATGCGCTTATTATGCGCGTTTGTT AGTGAGCGATGAAAAAGGGGTTTTTTCTCAAATTAGCGCGATTTTAGCCCAAAATGATATTTCGCTCAACAATGTCTTAC AAAAAGAAATCCCGCATTCCAACAAGGCTAAAATCTTATTTTCCACGCACACCACCAACGAAAAATCTATGTTAAACGCC CTTAAAGAGCTTGAAAATCTAAAAAGCGTGCTAGACACCCCTAAAATGATCCGTTTGGAACATTGA Protein sequence : MKKRLNIGLVGLGCVGSAVAKILQENQEIIKDRAGVEIGIKKAVVRDVKKRKGYSFEISNDLESLIEDEEIDIIVELMGG VEAPYLLAKKTLAKQKAFVTANKAMLAYHRYELEQIAKNTPIGFEASVCGGIPIIKALKDGLSANHILSFKGILNGTSNY ILSQMFKNQASFKDALKDAQHLGYAELNPEFDIKGIDAAHKLLILASLAYGIDAKLEEILIEGIEKIEPDDMEFAKEFGY SIKLLGIAKKHPDCIELRVHPSMIKNECMLSKVDGVMNAISVIGDKVGETLYYGAGAGGEPTASAVISDIIEIARKKSSL MLGFETPQKLPLKPKEEIQCAYYARLLVSDEKGVFSQISAILAQNDISLNNVLQKEIPHSNKAKILFSTHTTNEKSMLNA LKELENLKSVLDTPKMIRLEH |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00305 | YP_008207770.1 | Homoserine dehydrogenase | Not tested | AbaR25 | Protein | 4e-60 | 42 |
| BJAB0868_00309 | YP_008211635.1 | Homoserine dehydrogenase | Not tested | AbaR26 | Protein | 4e-60 | 42 |
