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Name : katA (HPKB_0474) Accession : YP_005761993.1 Strain : Helicobacter pylori 52 Genome accession: NC_017354 Putative virulence/resistance : Unknown Product : catalase Function : - COG functional category : - COG ID : - EC number : - Position : 492110 - 493627 bp Length : 1518 bp Strand : + Note : Consensus COG by CONSORF: COG0753. Candidate starts by CONSORF: 492068,492110 DNA sequence : ATGGTTAATAAAGATGTGAAACAAACCACTGCTTTTGGTGCTCCCGTTTGGGATGACAACAATGTGATTACGGCTGGCCC TAGAGGTCCTGTTTTATTACAAAGCACTTGGTTTTTGGAAAAGTTAGCGGCGTTTGATAGAGAAAGGATCCCTGAAAGGG TGGTGCATGCTAAAGGAAGCGGAGCTTATGGCACTTTCACCGTGACTAAAGACATCACTAAATACACTAAAGCGAAAATT TTCTCTAAAGTGGGCAAAAAAACCGAATGCTTTTTCAGATTTTCTACTGTGGCTGGTGAAAGAGGCAGTGCGGATGCGGT AAGAGACCCTAGAGGTTTTGCGATGAAGTATTACACTGAAGAAGGTAACTGGGATTTGGTAGGGAACAACACGCCTGTTT TCTTTATCCGTGATGCGATCAAATTCCCTGATTTCATCCACACCCAAAAACGAGATCCTCAAACCAATTTGCCTAACCCC GACATGGTGTGGGATTTTTGGAGTAATGTTCCTGAAAGTTTGTATCAAGTAACATGGGTTATGAGCGATAGGGGTATTCC TAAATCTTTCCGCCACATGGATGGTTTTGGCAGCCACACTTTCAGCCTTATCAACGCAAAAGGCGAACGCTTTTGGGTGA AATTCCACTTTGAAACCATGCAAGGCGTTAAGCATTTGACTAACGAAGAAGCCGCAGAAATCAGAAAGCATGATCCTGAT TCCAATCAAAGGGATTTATTCAATGCGATCGCTAGAGGGGATTTCCCAAAATGGAAATTAAGCATTCAAGTGATGCCAGA AGAAGATGCTAAGAAGTATCGATTCCATCCGTTTGATGTGACTAAAATTTGGTATCTCCAAGATTATCCATTGATGGAAG TGGGCATTGTAGAGTTGAATAAAAATCCTGAAAACTATTTCGCAGAAGTGGAGCAAGCGGCATTCTCTCCGGCTAATGTC GTTCCTGGAATTGGCTATAGCCCTGATAGGATGTTACAAGGGCGCTTGTTCTCTTATGGGGACACACACCGCTACCGCTT AGGGGTTAATTATGCTCAAATACCGGTCAATAAACCAAGGTGTCCGTTCCACTCTTCTAGCAGAGATGGCTACATGCAAA ACGGATACTACGGCTCTTTACAAAACTATACGCCTAGCTCATTGCCTGGCTATAAAGAGGATAAGAGTGCGAGAGATCCT AAGTTCAACTTAGCTCATATTGAGAAAGAGTTTGAAGTGTGGAATTGGGATTACAGAGCTGATGATAGCGATTACTACAC CCAACCAGGTGATTACTACCGCTCATTGCCAGCTGATGAAAAAGAAAGGTTGCATGACACTATTGGAGAGTCTTTAGCTC ATGTTACCCATAAAGAAATTGTGGATAAACAATTGGAGCATTTCAAGAAAGCTGACCCCAAATACGCTGAGGGAGTTAAA AAAGCTCTTGAAAAACACCAAAAAATGATGAAAGACATGCATGGAAAAGACATGCACCACATGAAAAAGAAAAAGTAA Protein sequence : MVNKDVKQTTAFGAPVWDDNNVITAGPRGPVLLQSTWFLEKLAAFDRERIPERVVHAKGSGAYGTFTVTKDITKYTKAKI FSKVGKKTECFFRFSTVAGERGSADAVRDPRGFAMKYYTEEGNWDLVGNNTPVFFIRDAIKFPDFIHTQKRDPQTNLPNP DMVWDFWSNVPESLYQVTWVMSDRGIPKSFRHMDGFGSHTFSLINAKGERFWVKFHFETMQGVKHLTNEEAAEIRKHDPD SNQRDLFNAIARGDFPKWKLSIQVMPEEDAKKYRFHPFDVTKIWYLQDYPLMEVGIVELNKNPENYFAEVEQAAFSPANV VPGIGYSPDRMLQGRLFSYGDTHRYRLGVNYAQIPVNKPRCPFHSSSRDGYMQNGYYGSLQNYTPSSLPGYKEDKSARDP KFNLAHIEKEFEVWNWDYRADDSDYYTQPGDYYRSLPADEKERLHDTIGESLAHVTHKEIVDKQLEHFKKADPKYAEGVK KALEKHQKMMKDMHGKDMHHMKKKK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| katA | ABD94664.1 | catalase isozyme A | Not tested | ExoU island A | Protein | 1e-135 | 60 |
| katA | YP_005126717.1 | catalase | Not tested | Not named | Protein | 8e-93 | 52 |
| katA | YP_005680448.1 | catalase | Not tested | PiCp 3 | Protein | 2e-90 | 47 |
| katA | YP_005682539.1 | catalase | Not tested | PiCp 3 | Protein | 2e-90 | 47 |
| katA | YP_003782575.1 | catalase | Not tested | PiCp 3 | Protein | 2e-90 | 47 |
| katA | YP_005684630.1 | catalase | Not tested | PiCp 3 | Protein | 2e-90 | 47 |
