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Name : lysS (HPKB_0192) Accession : YP_005761727.1 Strain : Helicobacter pylori 52 Genome accession: NC_017354 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : - COG ID : - EC number : - Position : 193996 - 195501 bp Length : 1506 bp Strand : + Note : Consensus COG by CONSORF: COG1190 DNA sequence : ATGTTTTCCAACCAATACATCCAACAACGCATCCATAAAGCCAACAGCTTGAGGGAAGAAGGGAAAAACCCTTATAAAAA TGGCTTGAAACGAAGCCTCACAAACGCCGCTTTTTTAGAAAAATACGCTTATGTTAAGGGTTTAGAAGAGCCTAAAGACA AGGAAAAATGCGAGAGTATTGTAGGGAGGGTCAAGCTTTTGCGTCTAATGGGTAAGGCATGTTTTATTAAAATTGAAGAT GAAAGCGCGATTTTGCAAGCTTATGTTTCGCAAAATGAATTGAACGATGAATTTAAAAGCCTGAAAAAGCATTTAGAAGT GGGCGATATTGTGTTGGTGAAAGGTTTTCCTTTTGCTACCAAAACCGGTGAATTAAGCGTTCATGCCCTAGAATTTCATA TTTTAAGCAAAACCATTGTGCCTTTACCTGAAAAATTCCATGGACTGAGCGATATAGAATTGCGTTACCGCCAGCGCTAC TTGGATTTGATAGTCAATCCTAGCGTTAAAGATGTGTTTAAAAAACGCAGTTTGATTGTTTCTAGCGTGCGGAAATTCTT TGAAACGGAAGGGTTTTTAGAAGTGGAAACCCCCATGATGCACCCCATTCCTGGCGGGGCGAACGCAAGGCCTTTTATCA CTTACCATAACGCTTTAGAAATTGAAAGGTATTTAAGAATCGCTCCAGAATTATACCTCAAACGCTTGATTGTGGGGGGT TTTGAAGCGGTGTTTGAAATCAATCGTAATTTCAGGAATGAGGGCATGGATCACAGCCATAACCCCGAATTTACGATGAT TGAGTTTTATTGGGCGTATCACACTTATGAAGATCTGATTGAACTCAGCAAGAGGCTATTTGACTACTTGCTAAAGACTT TGAACTTACCTTCAAAAATCATTTATAACGATATGGAAGTGGATTTTAACCAAACGAGCGTGATTTCTTATTTGGACGCT TTAGAAACAATAGGGGGCATTAGTAAGGATATTTTAGAAAAAGAAGACAGGCTTTTGGCTTATTTGTTAGAGCAAGGCAT CAAAGTAGAGCCAAATCTCACTTATGGTAAATTGCTCGCTGAAGCGTTTGATCATTTTGCAGAGCACCAACTCATCAACC CCACTTTTGTAACCCAATACCCCATTGAGATTAGCCCCCTAGCCAGACGCAACGATAGTAACCCTAATATTGCTGACAGG TTTGAATTGTTTATTGCAGGGAAAGAAATCGCTAACGGCTTTAGCGAGTTGAACGATCCTTTAGATCAGTTAGAACGCTT TAAAAATCAAGTGGCTGAGAAAGAAAAAGGCGATGAAGAAGCCCAATACATGGATGAAGATTACGTGTGGGCGTTAGCCC ATGGAATGCCCCCCACTGCAGGGCAAGGCATAGGCATTGATAGATTAGTGATGCTACTCACTGGAGCTAAAAGCATTAAA GATGTGATTTTATTCCCAGCGATGCGTCCTGTTAAAAACGATTTTAATGTGGAGAGTGAAGAATAA Protein sequence : MFSNQYIQQRIHKANSLREEGKNPYKNGLKRSLTNAAFLEKYAYVKGLEEPKDKEKCESIVGRVKLLRLMGKACFIKIED ESAILQAYVSQNELNDEFKSLKKHLEVGDIVLVKGFPFATKTGELSVHALEFHILSKTIVPLPEKFHGLSDIELRYRQRY LDLIVNPSVKDVFKKRSLIVSSVRKFFETEGFLEVETPMMHPIPGGANARPFITYHNALEIERYLRIAPELYLKRLIVGG FEAVFEINRNFRNEGMDHSHNPEFTMIEFYWAYHTYEDLIELSKRLFDYLLKTLNLPSKIIYNDMEVDFNQTSVISYLDA LETIGGISKDILEKEDRLLAYLLEQGIKVEPNLTYGKLLAEAFDHFAEHQLINPTFVTQYPIEISPLARRNDSNPNIADR FELFIAGKEIANGFSELNDPLDQLERFKNQVAEKEKGDEEAQYMDEDYVWALAHGMPPTAGQGIGIDRLVMLLTGAKSIK DVILFPAMRPVKNDFNVESEE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 2e-105 | 50 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_005761727.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 1e-105 | 50 |
