Gene Information

Name : kdpD(SCCmec) (SLUG_00850)
Accession : YP_005759211.1
Strain : Staphylococcus lugdunensis N920143
Genome accession: NC_017353
Putative virulence/resistance : Unknown
Product : sensor kinase protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 88918 - 91572 bp
Length : 2655 bp
Strand : -
Note : -

DNA sequence :
ATGGAAAGTTCATATAAAAAAAGAGGAACTCTGACCATTTATTTAGGTTATAGCCCTGGCGTTGGGAAAACGTATGAAAT
GCTTTCAAATGGTATCGACCAATATAAAGAAGGGGTGGATGTTAAGATCGGTTATATTGAGCCACATCAACGTCCTGAGA
CAAATGCGCTTGCCAAACAACTTCCTGAAATTACAACTTCTAGCCATAAATTCGGTAGCCATATGTTTCAGTTTATCAAT
GTTGAAAGAATTATTGAGGCTCAACCCGATATCGTATTGATTGATGAACTCGCACACACTAATATTTCTAAAAATCGTCA
TTTGAAAAGATATATGGATATTGAAGAAATACTGTCTCACGGTATCGATGTGTGGACAACACTAAATATCCAACATATAG
AAAGTTTAAGTGGACAAATTGAATTAATGACAGGTATTCAAGTGACAGAACGCGTACCCGATCAATTTATTATGTCGGCA
GATGCATTTGAAGTTGTAGATATTTCGCCGAATATGCTGATACAACGTTTAAAAGCTGGAAAAGTATATAAAAAAGAACG
TTTAGAAACAGCGTTTTCCAACTTTTTTTCTTATGAAAATTTGACTAGATTGCGTGAACTTGCGCTCAGAACTGTAGCAG
ACATTATGAGTCAAAAAGAACAACAATGTAATACAAAACATACAGATATCACGCCTCATATTGCCGTTGCTGTCAGTGGT
AGTATTTATAACGAGCGCGTTATTCGAGAAGCAAGACGTTCTGCCTATAAAGAACATGCCAAATTTACAGCTATTTATAT
CGACACCTTTGAGACACCTTCAGAAAGCAAAATACAAGACCATTACGTGCATAAAAATCTTATGCTCGCCAAATCGTTAG
GTGCAGAGATTAAAGTTCTTTATGCACAAGACGTTGCAAAAGCATTAACAGATTGGTGCGATAGCGCATTTGTTACTAAG
TTAGTTCTTGGGCAATCAGAAAACCCAAAATGGAAACATTATTTTAAAAAATCACTTATTGAAGAAATTAACCATGCGCC
GCATTATTTCAAATTAGAGATTGTGCCTATCTATTATATAAACTCAAATAAGCAAGAACGTACACAATCAATGAATAAAC
CATCTTATCAAATAGCATTATCTGTAGATATAATGAAAATGCTTATTATTCAAACATTTTGTGTTCTCCTTGGTATGTGG
ATTTACACAATTGATAAAAATGAATCAAGCGCAATTATTTTACTATTATTCTTTATTGGTATTATCTTATTATCCATATG
GACGCAATCTTATCTCATTGGATTCTTTACATCGATATTAAACGTTTTTATTTTTAATTATTTCTTTACCGTGCCAAGAT
TCACTCTAGAAATGTATCGATTTGAATACCCTATTACATTTGTAATCAGTATTTTTGCAAGTATTTTTACGAGTGCCATT
TTAAAAAATTTAAAGTATCAGCACTCATTAACAGAGCGCCAATTATATCGTACTGATATTATGTTACAGTTTAATCAATC
TATTAAAGAATCTTATTCTATAATGAAACTGTTAAATATAGCTGGTGAACAAATCCATCAATTGTTACATCAAAATGTTA
CGGTGTTTTTAGTCGAATCAAAAAAAGTAGTCAAATCATCTTCATTTGGACATCCATCATTTAAAAACACAAAAAATATG
GAAGATGTAGAAGATGCAGAAACATTGACTTGGGTCATCGAAAACGAACATCGTGCCGGAAGACTTACCGATACCTTCCC
CGGAAGCAAATATCTATGTATACCTATAGGTAGTAATCCCGTAAAAGGAATCGTGTCCATTCAATTTGATGATAAAGATT
ATATCGATATGTATGACAATTCAATATTAGACTCTATGTTAAATGATTTAATGCTGGCAATAGAAAATGTATATTTACTT
AAACAAACAAGACAATCGATGTTAACAGCTGAGCGCGAAGCAACACGCTCTAATTTCTTACATTCTATTTCACATGATAT
ACGGACACCACTCACATCTATTATTGGAAACTTAGATGTGTTGAAATTTCACAGTAAGAGCTTAGATAACGCTGAAAAAT
TAAAACTATTAACTGCTTCATATAAGGAAGCACAATACCTGTATACACTTGTTACTAATATTTTATCTCTCACTAAGTTG
GAAAGTTCTGATATAAAAGTAAAACGGACGGCTTATCTTATAGAAGAACTGTTAGAAGAATTCGAGCAAGGGTTGATTCG
CAGACACCAAAATCAAAAGGTAACGATTGAAACCGAAGATACCATGGCATTCGTTCACATTGATAGCAAACTAATACTGC
AAGTTTTATTTAATCTCGTTGATAACGCGTTGAAACACTCTGGGACCACTTCAGAAATTAAACTTTGCATTCATCTACAG
CCATCTCGTGTACGCTTTGAAATGATTGATTTTGGGAAAGGGATTCCTGAAGAAGAACGACATTTAATTTATAAACCTTA
TTATTCAGGGGATTATTTTAAAGACAATAAAAAAGACAGCTTAGGACTGGGACTATATTTAGTGCAACTCATTTTAAAAC
AACATGATAGCCAATTAGAATACCAACCTAATCATCCACATGGCAGTATTTTTTATTTTTACTTAGATATAGATCAAATA
GATATGAAAGGGTGA

Protein sequence :
MESSYKKRGTLTIYLGYSPGVGKTYEMLSNGIDQYKEGVDVKIGYIEPHQRPETNALAKQLPEITTSSHKFGSHMFQFIN
VERIIEAQPDIVLIDELAHTNISKNRHLKRYMDIEEILSHGIDVWTTLNIQHIESLSGQIELMTGIQVTERVPDQFIMSA
DAFEVVDISPNMLIQRLKAGKVYKKERLETAFSNFFSYENLTRLRELALRTVADIMSQKEQQCNTKHTDITPHIAVAVSG
SIYNERVIREARRSAYKEHAKFTAIYIDTFETPSESKIQDHYVHKNLMLAKSLGAEIKVLYAQDVAKALTDWCDSAFVTK
LVLGQSENPKWKHYFKKSLIEEINHAPHYFKLEIVPIYYINSNKQERTQSMNKPSYQIALSVDIMKMLIIQTFCVLLGMW
IYTIDKNESSAIILLLFFIGIILLSIWTQSYLIGFFTSILNVFIFNYFFTVPRFTLEMYRFEYPITFVISIFASIFTSAI
LKNLKYQHSLTERQLYRTDIMLQFNQSIKESYSIMKLLNIAGEQIHQLLHQNVTVFLVESKKVVKSSSFGHPSFKNTKNM
EDVEDAETLTWVIENEHRAGRLTDTFPGSKYLCIPIGSNPVKGIVSIQFDDKDYIDMYDNSILDSMLNDLMLAIENVYLL
KQTRQSMLTAEREATRSNFLHSISHDIRTPLTSIIGNLDVLKFHSKSLDNAEKLKLLTASYKEAQYLYTLVTNILSLTKL
ESSDIKVKRTAYLIEELLEEFEQGLIRRHQNQKVTIETEDTMAFVHIDSKLILQVLFNLVDNALKHSGTTSEIKLCIHLQ
PSRVRFEMIDFGKGIPEEERHLIYKPYYSGDYFKDNKKDSLGLGLYLVQLILKQHDSQLEYQPNHPHGSIFYFYLDIDQI
DMKG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
kdpD NP_370595.1 sensor protein KdpD Not tested Type-II SCCmec Protein 0.0 80
kdpD NP_373307.1 hypothetical protein Not tested Type-II SCCmec Protein 0.0 80
SH0032 YP_251947.1 hypothetical protein Not tested SCCmec Protein 0.0 80
kdpD YP_190032.1 sensor histidine kinase KdpD Not tested Type-II SCCmec Protein 0.0 80
SAR0069 YP_039537.1 sensor kinase Not tested Type-II SCCmec Protein 0.0 80