Gene Information

Name : capB (SLUG_03210)
Accession : YP_005759446.1
Strain : Staphylococcus lugdunensis N920143
Genome accession: NC_017353
Putative virulence/resistance : Virulence
Product : capsular polysaccharide synthesis enzyme
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 340770 - 341465 bp
Length : 696 bp
Strand : +
Note : -

DNA sequence : 
ATGACTAAAAAGAATGAGAAACGAAAAAATTTAAATACGCCATTGTTTACTGAAGATAATTCTAAATCAATCGTGAGTGA
AAAAGTTAGAGGTATACGCTCTAATATCATGTTTTCAGGTGTAGAAGAAGTTCAAAGTATCATTGTTACTTCTGAAAAGC
CAGCTGCAGGTAAAAGTATTATTTCAGCGAATATTGCAATCACATATGCACAAGCAGGATATAAAACATTAATCATAGAT
GGAGATATGAGAAAGCCCACGCAACATTATCATTTTGAAACGACGAATTATGATGGATTATCAAATTTAATCATAGGAAA
GTCTAACTTTGATAAATCGATTATCAAGACGAGAGTAAAGAATCTTGACTTAATGACAGCAGGTCCCACACCACCTAATC
CATCTGAATTAATTGGTTCTGCCGCATTTGAGAACATATTACGTGATTTAAATGAAATATATGACTTCATTTTAATTGAT
ACACCACCAGTCATTTCAGTTACAGATGCGCAGGTTTATTTAAGATACGTACCTGAATGCGTCATGATCATTGATGTACA
GAATAATAATAAAAATGAAGTGAAGAAAGCAAAAGAATTAATTGAAAAAGTAGGAGGACGTGTAATAGGAGCAGTGTTAA
ATAAAACACCTAAAGAAAAATCATCTAGTTATTATTATTACGGAGATGATGAATAA

Protein sequence : 
MTKKNEKRKNLNTPLFTEDNSKSIVSEKVRGIRSNIMFSGVEEVQSIIVTSEKPAAGKSIISANIAITYAQAGYKTLIID
GDMRKPTQHYHFETTNYDGLSNLIIGKSNFDKSIIKTRVKNLDLMTAGPTPPNPSELIGSAAFENILRDLNEIYDFILID
TPPVISVTDAQVYLRYVPECVMIIDVQNNNKNEVKKAKELIEKVGGRVIGAVLNKTPKEKSSSYYYYGDDE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cap1B AAA64641.1 type 1 capsule synthesis gene Virulence SCCcap1 Protein 5e-63 65
SSP0061 YP_300151.1 capsular polysaccharide synthesis protein Not tested SCC15305cap Protein 5e-51 58

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
capB YP_005759446.1 capsular polysaccharide synthesis enzyme VFG1298 Protein 2e-54 58