Gene Information

Name : ccrB (HMPREF0772_10428)
Accession : YP_005746510.1
Strain : Staphylococcus aureus TCH60
Genome accession: NC_017342
Putative virulence/resistance : Unknown
Product : site-specific recombinase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 472329 - 473978 bp
Length : 1650 bp
Strand : +
Note : COG: COG1961

DNA sequence :
ATGAAGAAAGGATGTAACATAATGCAACAACTTAAAACAAAACGTGTCGGTATCTATGTACGTGTATCAACAGAAATGCA
AAGCACAGAAGGTTATAGTATCGACGGACAAATCAATCAAATCAAAGAATACTGTGACTTCCATCATTTTGAAGTTAAAG
ATATATACGCTGACCGTGGTATTTCAGGTAAATCTATGAACAGACCTGAGCTCCAACGTATGTTGAAAGATGCAAAAGAA
GGCAATATCGACTGTGTTATGGTATACAAAACAAACCGATTAGCTCGTAATACATCTGATCTTCTCAAAATTGTCGAAGA
TTTACACAAACAAAATGTCGAATTTTTCAGTTTGTCAGAGCGTATGGAAGTCAATACTTCTTCTGGTAAACTCATGTTAC
AGATACTTGCGAGTTTCTCAGAATTCGAACGTAATAACATTGTCGAGAACGTATTTATGGGTCAAACGAGACGTGCCCAA
GAAGGCTATTATCAAGGCAATTTACCACTAGGTTATGACAAAATACCAGATAGTAAACACGAGCTAATGATTAACCAACA
TGAAGCTAATATTGTAAAATATATATTCGAGTGCTATGCCAAAGGACATGGCTATCGTAAAATTGCCAATGCATTGAATC
ACAAAGGATATGTCACTAAAAAGGGGAAACCTTTCAGTATTAGTTCAATCACATACATCTTAGCTAACCCTTTCTATATC
GGCAAAATTCAATTTGCGAAATACAAAGATTGGAGTGAAAAACGTCGTAAAGGGCTGAATGATAAACCAGTGATAGCTGA
AGGTAAGCATTCCCCCATTATTAATCAAGATTTATGGGATAAAGTACAAATGCGTAAGAAACAAGTCAGTCAAAAACCCC
AAGTCCATGGCAAAGGAACGAATCTGCTTACAGGCATTATTCACTGTCCCCAATGTGGCGCACCTATGGCAGCAAGCAAT
ACCACGAATACTCTTAAAGACGGGACTAAGAAACGTATTCGTTACTATTCATGTAGTAATTTTCGGAACAAGGGTTCCAA
AGTATGTTCGGCAAACAGTGTAAGAGCTGATGTGATTGAAGATTATGTGATGAAGCAAATACTTGAAATAGTCAAAAGTG
ATAAAGTCATTCAACGCGTAGTAACACACGTCAATCAAGAAAATCAAGTTGATGGCGCTGCACTTCATCACGATATTGCT
TATAAGCAACAACAATATGATGAAGTACAAATCAAAATAAATAACTTGATTAAAACCATCGAGGATAATCCGGACTTAAC
ATCAGTAATCAGACCAAGTATTCAAAAATATGAAAAGCAACTCAATGACATTACGAATCAAATCAACCAACTCAAAAATC
AACAAAATGAAGATAAGACTTTATTTGATGCCAAAGAAATCAGTAAACTATTACAACACATCTTTCATGATATTAAGCAC
ATAGAAAAATCTCGACTCAAAGCATTGTATCTATCAGTGATTGATCGCATTGATATTAAAAAAGATGGTAATCATAAAAA
ACAATTCTATGTCACACTCAAACTTAATAACGAAATCATTAAACAACTTTTCAATAATAAACAACTCGACGAAGTGCATC
TCAGCACTTCGTCTTTATTTTTGCCCCAAACACTATATCTTACTATTTAG

Protein sequence :
MKKGCNIMQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKSMNRPELQRMLKDAKE
GNIDCVMVYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTSSGKLMLQILASFSEFERNNIVENVFMGQTRRAQ
EGYYQGNLPLGYDKIPDSKHELMINQHEANIVKYIFECYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYI
GKIQFAKYKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWDKVQMRKKQVSQKPQVHGKGTNLLTGIIHCPQCGAPMAASN
TTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQILEIVKSDKVIQRVVTHVNQENQVDGAALHHDIA
YKQQQYDEVQIKINNLIKTIEDNPDLTSVIRPSIQKYEKQLNDITNQINQLKNQQNEDKTLFDAKEISKLLQHIFHDIKH
IEKSRLKALYLSVIDRIDIKKDGNHKKQFYVTLKLNNEIIKQLFNNKQLDEVHLSTSSLFLPQTLYLTI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SAMSHR1132_00400 YP_005324563.1 site-specific recombinase Not tested Type-IIIinv SCCmec Protein 0.0 100
ccrB YP_492757.1 cassette chromosome recombinase B Not tested Type-IV SCCmec Protein 0.0 100
ccrB2 BAC67561.1 cassette chromosome recombinase B2 Not tested Type-IVc SCCmec Protein 0.0 100
ccrB BAB72128.1 cassette chromosome recombinase B Not tested Type-IVb SCCmec Protein 0.0 99
ccrB BAA82196.1 site-specific recombinase Not tested Type-II SCCmec Protein 0.0 99
ccrB YP_039530.1 site-specific recombinase Not tested Type-II SCCmec Protein 0.0 99
SERP2499 YP_190041.1 cassette chromosome recombinase B Not tested Type-II SCCmec Protein 0.0 99
ccrB NP_370585.1 cassette chromosome recombinase B Not tested Type-II SCCmec Protein 0.0 99
ccrB NP_373297.1 cassette chromosome recombinase B Not tested Type-II SCCmec Protein 0.0 99
ccrB NP_644853.1 cassette chromosome recombinase B Not tested Type-IV SCCmec Protein 0.0 98
ccrB BAB72109.1 cassette chromosome recombinase B Not tested Type-IVa SCCmec Protein 0.0 98
SE0036 NP_763591.1 cassette chromosome recombinase B Not tested SCCpbp4 Protein 0.0 93
ccrB2 DAA01833.1 cassette chromosome recombinase B type 2 Not tested SCCpbp4 Protein 0.0 93
ccrB3 YP_005754051.1 site-specific recombinase CcrB3 Not tested Type-XI SCCmec Protein 0.0 87
ccrB3 BAB46972.1 cassette chromosome recombinase B3 Not tested Type-IIIinv SCCmec Protein 0.0 87
ccrB3 BAB47597.1 cassette chromosome recombinase B3 Not tested Type-III SCCmec Protein 0.0 87
SSP0035 YP_300125.1 cassette chromosome recombinase B Not tested SCC15305RM Protein 0.0 84
ccrB YP_042165.1 site-specific recombinase Not tested SCC476 Protein 0.0 81
ccrB1 BAB83487.2 site-specific recombinase Not tested SCC 12263 Protein 0.0 80
ccrB4 DAA01835.1 cassette chromosome recombinase B type 4 Not tested SCCpbp4 Protein 0.0 73
SE0056 NP_763611.1 cassette chromosome recombinase B Not tested SCCpbp4 Protein 0.0 73