Gene Information

Name : cap5B (HMPREF0772_10348)
Accession : YP_005746430.1
Strain : Staphylococcus aureus TCH60
Genome accession: NC_017342
Putative virulence/resistance : Virulence
Product : capsular polysaccharide biosynthesis protein Cap5B
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 381981 - 382667 bp
Length : 687 bp
Strand : -
Note : COG: COG0489

DNA sequence : 
ATGTCAAAAAAGGAAAATACGACAACAACACTATTTGTGTATGAAAAACCAAAATCAACAATTAGTGAAAAGTTTCGAGG
TATACGTTCAAACATCATGTTTTCAAAAGCAAATGGTGAAGTAAAGCGCTTATTGGTTACTTCTGAAAAGCCTGGTGCAG
GTAAAAGTACAGTCGTATCCAATGTAGCGATTACTTATGCACAAGCAGGTTATAAAACGTTAATTATCGATGGGGATATG
CGTAAGCCAACACAAAACTATATTTTTAATGAACAAAATAATAATGGATTATCGAATTTAATCATTGGTAGAACGACTAT
GTCAGAAGCTATTACGACGACAGAAATTGATAATTTAGATTTACTAACAGCTGGTCCTGTACCTCCTAATCCAACAGAAT
TAATTGGTTCTGAAAGATTTAAAGAGTTAGTTAATCTTTTCAATGAGCGTTATGACATCATTATTGTCGATACACCGCCA
GTTAATACCGTGACTGATGCACAACTATATGCACGTGCTATTAAAGATAGTCTGTTAGTCATTGATAGTGAAAAAAATGA
TAAAAATGAAGTTAAAAAAGCTAAAACACTTATGGAAAAAGCAGGCAGTAATATTCTAGGCGTCATTTTAAATAAGGCAA
AAGTAGATAAGTCTTCTAGTTATTATCACTATTATGGAGATGAATAG

Protein sequence : 
MSKKENTTTTLFVYEKPKSTISEKFRGIRSNIMFSKANGEVKRLLVTSEKPGAGKSTVVSNVAITYAQAGYKTLIIDGDM
RKPTQNYIFNEQNNNGLSNLIIGRTTMSEAITTTEIDNLDLLTAGPVPPNPTELIGSERFKELVNLFNERYDIIIVDTPP
VNTVTDAQLYARAIKDSLLVIDSEKNDKNEVKKAKTLMEKAGSNILGVILNKAKVDKSSSYYHYYGDE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cap1B AAA64641.1 type 1 capsule synthesis gene Virulence SCCcap1 Protein 3e-73 64
SSP0061 YP_300151.1 capsular polysaccharide synthesis protein Not tested SCC15305cap Protein 3e-62 59

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
cap5B YP_005746430.1 capsular polysaccharide biosynthesis protein Cap5B VFG1298 Protein 1e-100 96