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Name : gabD (HMPREF0772_11068) Accession : YP_005747150.1 Strain : Staphylococcus aureus TCH60 Genome accession: NC_017342 Putative virulence/resistance : Virulence Product : succinate-semialdehyde dehydrogenase Function : - COG functional category : - COG ID : - EC number : 1.2.1.16 Position : 1143208 - 1144635 bp Length : 1428 bp Strand : + Note : COG: COG1012 DNA sequence : ATGAGAGACTACACAAAGCAATACATTAATGGCGAATGGGTAGAAAGTAATAGTAATGAAACGATAGAAGTTATAAATCC AGCAACCGAAGAAGTAATCGGGAAAGTTGCTAAAGGTAATAAAGCTGATGTTGATAAAGCCGTCGAGGCGGCAGACAATG TTTATTTAGAGTTCCGTCATACATCTGTGAAAGAAAGACAAGCGTTATTAGATAAAATTGTAAAAGAATATGAAAACAGA AAAGACGATATTGTACAAGCTATTACGGATGAGTTAGGTGCTCCTTTATCATTATCTGAGCGTGTCCATTATCAAATGGG ACTAAACCATTTTGTTGCAGCGAGAGACGCATTAGATAATTACGAATTTGAAGAACGCCGCGGAGATGATTTAGTTGTTA AAGAAGCAATCGGTGTATCTGGCTTAATTACACCGTGGAACTTCCCTACAAACCAAACATCATTAAAATTAGCAGCAGCA TTTGCGGCTGGTAGTCCAGTTGTACTTAAACCATCTGAAGAAACACCATTTGCAGCTGTTATTTTAGCTGAGATTTTTGA TAAAGTCGGTGTTCCTAAAGGTGTATTTAACCTTGTTAATGGTGATGGTGCAGGCGTTGGGAATCCTTTATCTGAACATC CTAAAGTACGCATGATGTCATTTACAGGATCAGGCCCTACTGGTTCTAAAATTATGGAAAAAGCTGCTAAAGATTTTAAA AAGGTATCATTAGAGCTTGGTGGCAAATCACCATACATCGTCCTAGATGACGTAGATATTAAAGAAGCGGCTAAAGCAAC AACAGGCAAAGTTGTTAATAATACTGGTCAAGTATGTACAGCTGGTACACGTGTTTTAGTGCCTAACAAAATTAAAGATG CATTCTTAGCTGAATTAAAAGAACAATTTAGCCAAGTGCGTGTCGGTAATCCAAGAGAAGATGGTACACAAGTAGGCCCT ATCATTAGTAAAAAACAATTTGATCAAGTACAAAATTATATTAATAAAGGTATTGAAGAAGGTGCTGAATTATTTTATGG TGGTCCTGGTAAACCAGAAGGACTTGAAAAAGGATACTTTGCACGTCCGACAATTTTTATTAATGTAGATAATCAAATGA CGATAGCACAAGAAGAAATTTTTGGGCCAGTAATGTCAGTTATCACTTATAACGATTTAGATGAAGCGATTCAAATTGCA AATGATACAAAATATGGTTTAGCAGGATATGTTATTGGTAAGGACAAAGAAACATTGCATAAAGTAGCTCGTTCTATTGA AGCAGGTACAGTAGAAATAAACGAAGCAGGTAGAAAGCCAGACTTACCATTTGGTGGCTATAAACAATCTGGTTTAGGTC GTGAATGGGGCGATTATGGTATTGAAGAGTTCTTAGAAGTGAAATCTATAGCTGGCTATTTTAAATAA Protein sequence : MRDYTKQYINGEWVESNSNETIEVINPATEEVIGKVAKGNKADVDKAVEAADNVYLEFRHTSVKERQALLDKIVKEYENR KDDIVQAITDELGAPLSLSERVHYQMGLNHFVAARDALDNYEFEERRGDDLVVKEAIGVSGLITPWNFPTNQTSLKLAAA FAAGSPVVLKPSEETPFAAVILAEIFDKVGVPKGVFNLVNGDGAGVGNPLSEHPKVRMMSFTGSGPTGSKIMEKAAKDFK KVSLELGGKSPYIVLDDVDIKEAAKATTGKVVNNTGQVCTAGTRVLVPNKIKDAFLAELKEQFSQVRVGNPREDGTQVGP IISKKQFDQVQNYINKGIEEGAELFYGGPGKPEGLEKGYFARPTIFINVDNQMTIAQEEIFGPVMSVITYNDLDEAIQIA NDTKYGLAGYVIGKDKETLHKVARSIEAGTVEINEAGRKPDLPFGGYKQSGLGREWGDYGIEEFLEVKSIAGYFK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| VC0819 | NP_230467.2 | aldehyde dehydrogenase | Not tested | VPI-1 | Protein | 4e-48 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| gabD | YP_005747150.1 | succinate-semialdehyde dehydrogenase | VFG0082 | Protein | 2e-48 | 42 |
