Gene Information

Name : ccrB (SAA6008_00057)
Accession : YP_005743456.1
Strain : Staphylococcus aureus JKD6008
Genome accession: NC_017341
Putative virulence/resistance : Unknown
Product : cassette chromosome recombinase B
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 63304 - 64932 bp
Length : 1629 bp
Strand : -
Note : -

DNA sequence :
ATGCAACAACTCAAACAAAAACGTGTCGGTATCTATGTTCGTGTATCAACGGAAATCCAAAGTACTGAAGGCTATAGTAT
CGATGGACAAATCAATCAAATTCGAGAATATTGTGATTTCAATAACTTTGTTGTTGTAGATGTATACGCGGATAGAGGTA
TCTCTGGAAAATCTATGAACCGACCAGAACTACAACGTTTGTTAAAAGATGCGAACGAAGGTCAGATTGATTCTGTTATG
GTCTACAAAACAAACCGACTAGCACGTAACACTTCTGACTTACTCAAAATTGTTGAAGACCTTCATCGTCAAAATGTCGA
ATTCTTCAGCTTATCTGAGCGTATGGAAGTCAATACAAGCAGTGGTAAATTGATGCTACAAATTCTAGCGAGTTTTTCAG
AATTTGAAAGAAATAATATTGTCGAAAATGTATTCATGGGTCAAACCCGACGCGCTCAAGAAGGCTATTATCAAGGCAAT
TTGCCGCTGGGCTATGACAAAATACCGGATAGCAAGCATGAACTCATGATAAACCAACATGAAGCGAATATTGTCAAATA
TATATTTGAGTCATATGCTAAAGGCCACGGATATCGTAAAATTGCGAATGCACTCAATCACAAAGGATACGTGACTAAAA
AAGGAAAGCCTTTCAGTATTGGTTCAGTGACCTATATCTTATCTAATCCATTCTATGTTGGTAAAATTCAATTCGCAAAG
TACAAAGATTGGAATGAAAAGCGTCGTAAAGGGCTGAATGATAAACCAATAATAGCTGAAGGTAAGCATTCCCCTATTAT
TATTCAAGACTTATGGGATAAAGTCCAATTACGTAAAAAACAAGTCAGTCAAAAACCTCAAGTCCACGGTAAAGGAACTA
ATCTATTAACAGGTATCGTTCATTGTCCACAATGTGGTGCACCAATGGCAGCTAGTAACACAACGAACACATTGAAAGAT
GGTACCAAGAAGCGAATACGTTATTATTCTTGCAGTAACTTCCGAAACAAAGGCTCAAAAGTATGTTCTGCGAATAGCGT
TAGAGCTGATGTGATTGAGAAATACGTCATGGATCAAATACTCGAAATTGTCAAAAGTGATAAAGTCATTAACCAAGTCT
TAGAACGTGTCAATCAAGAAAATAAAGTCGATATTGGTGCATTGAACCACGATATCGCTTATAAACAACAACAATACGAT
GAAGTCAGCGGGAAACTCCATAATTTAGTTAAAACCATTGAAGATAATCCGGACCTAACATCTGCATTGAAAGCAACTAT
TCATCAATATGAAACACAACTCAATGACATTACAAATCAAATGAATCAACTCAAACAGCAACAAAATCAAGAGAAACTAT
CTTATGATACGAAACAAATCGCTGCCCTATTACAACGAATATTTCAAAATATAGAATCAATGGATAAAGCACAACTCAAA
GCATTATATCTTACAGTCATTGACCGTATTGATATTCGTAAAGACGGTAATCATAAAAAACAGTTCTACGTTACACTAAA
ACTCAATAATGAAATTATTAAACAACTTTTCAATAATACCCCTCTCGACGAAGTGCTCCTCAGCACTTCGTCTTTATTTT
TGCCTCAAACGCTCTTTCTTCAAATCTAA

Protein sequence :
MQQLKQKRVGIYVRVSTEIQSTEGYSIDGQINQIREYCDFNNFVVVDVYADRGISGKSMNRPELQRLLKDANEGQIDSVM
VYKTNRLARNTSDLLKIVEDLHRQNVEFFSLSERMEVNTSSGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGN
LPLGYDKIPDSKHELMINQHEANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSIGSVTYILSNPFYVGKIQFAK
YKDWNEKRRKGLNDKPIIAEGKHSPIIIQDLWDKVQLRKKQVSQKPQVHGKGTNLLTGIVHCPQCGAPMAASNTTNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQILEIVKSDKVINQVLERVNQENKVDIGALNHDIAYKQQQYD
EVSGKLHNLVKTIEDNPDLTSALKATIHQYETQLNDITNQMNQLKQQQNQEKLSYDTKQIAALLQRIFQNIESMDKAQLK
ALYLTVIDRIDIRKDGNHKKQFYVTLKLNNEIIKQLFNNTPLDEVLLSTSSLFLPQTLFLQI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ccrB3 BAB47597.1 cassette chromosome recombinase B3 Not tested Type-III SCCmec Protein 0.0 100
ccrB3 BAB46972.1 cassette chromosome recombinase B3 Not tested Type-IIIinv SCCmec Protein 0.0 99
ccrB3 YP_005754051.1 site-specific recombinase CcrB3 Not tested Type-XI SCCmec Protein 0.0 93
ccrB BAB72128.1 cassette chromosome recombinase B Not tested Type-IVb SCCmec Protein 0.0 88
ccrB BAB72109.1 cassette chromosome recombinase B Not tested Type-IVa SCCmec Protein 0.0 88
SERP2499 YP_190041.1 cassette chromosome recombinase B Not tested Type-II SCCmec Protein 0.0 87
ccrB NP_370585.1 cassette chromosome recombinase B Not tested Type-II SCCmec Protein 0.0 87
ccrB BAA82196.1 site-specific recombinase Not tested Type-II SCCmec Protein 0.0 87
ccrB NP_373297.1 cassette chromosome recombinase B Not tested Type-II SCCmec Protein 0.0 87
ccrB2 BAC67561.1 cassette chromosome recombinase B2 Not tested Type-IVc SCCmec Protein 0.0 87
SAMSHR1132_00400 YP_005324563.1 site-specific recombinase Not tested Type-IIIinv SCCmec Protein 0.0 87
ccrB YP_492757.1 cassette chromosome recombinase B Not tested Type-IV SCCmec Protein 0.0 87
SSP0035 YP_300125.1 cassette chromosome recombinase B Not tested SCC15305RM Protein 0.0 87
ccrB YP_039530.1 site-specific recombinase Not tested Type-II SCCmec Protein 0.0 87
ccrB YP_042165.1 site-specific recombinase Not tested SCC476 Protein 0.0 86
ccrB2 DAA01833.1 cassette chromosome recombinase B type 2 Not tested SCCpbp4 Protein 0.0 86
SE0036 NP_763591.1 cassette chromosome recombinase B Not tested SCCpbp4 Protein 0.0 86
ccrB NP_644853.1 cassette chromosome recombinase B Not tested Type-IV SCCmec Protein 0.0 86
ccrB1 BAB83487.2 site-specific recombinase Not tested SCC 12263 Protein 0.0 85
SE0056 NP_763611.1 cassette chromosome recombinase B Not tested SCCpbp4 Protein 0.0 74
ccrB4 DAA01835.1 cassette chromosome recombinase B type 4 Not tested SCCpbp4 Protein 0.0 74