Gene Information

Name : vraD (SAA6008_02758)
Accession : YP_005746065.1
Strain : Staphylococcus aureus JKD6008
Genome accession: NC_017341
Putative virulence/resistance : Resistance
Product : SalX, ABC-type antimicrobial peptide transport system, involved in vancomycin resistance
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2908866 - 2909624 bp
Length : 759 bp
Strand : +
Note : -

DNA sequence : 
ATGACGATATTATCAGTGCAACATGTTTCAAAAACATACGGTAAAAAGCACACATTTCAAGCACTTAAAGATATTAACTT
TGACATACAAAAAGGCGAATTCGTTGCGATTATGGGGCCTTCTGGATCAGGTAAGACAACCTTATTAAATGTACTAAGTT
CAATTGACCAAATTTCTAGCGGTAGCGTGATTGCTAACGGACAAGAGCTTAATAAACTTAATCAAAAAGCACTTGCCAAA
TTCCATAAAGAATCATTAGGTTTCATCTTCCAAGATTACAGTATTCTGCCGACATTAACTGTTAAAGAAAACATTATGTT
ACCTTTATCTGTTCAAAAAATGTCGAAAGCAACAATGGAAGAAAATTATAAAGCAATCACAACAGCATTAGGTATTTATG
ACCTAGGAAATAAATACCCTAGCGAATTATCTGGTGGTCAACAACAAAGAACTGCAGCAGCGAGAGCATTTGTTCACAAA
CCACAAATCATATTTGCAGATGAGCCAACAGGCGCACTCGACTCGAAAAGTGCAAATGATTTATTACAACGTTTGGAAGA
AATGAATAAATCGTTTGATACCACAATTGTCATGGTTACACATGATCCGGTTGCAGCAAGTTTTGCAGAACGTGTCATCA
TGCTAAAAGATGGCCAAATTCATACACAACTTTATCAGGAAGGACGTTCTAAACAGGCCTTTTATGAAGACATTGTACAT
CTTCAATCAGTATTAGGTGGTGTCTCAAATGACATTTAA

Protein sequence : 
MTILSVQHVSKTYGKKHTFQALKDINFDIQKGEFVAIMGPSGSGKTTLLNVLSSIDQISSGSVIANGQELNKLNQKALAK
FHKESLGFIFQDYSILPTLTVKENIMLPLSVQKMSKATMEENYKAITTALGIYDLGNKYPSELSGGQQQRTAAARAFVHK
PQIIFADEPTGALDSKSANDLLQRLEEMNKSFDTTIVMVTHDPVAASFAERVIMLKDGQIHTQLYQEGRSKQAFYEDIVH
LQSVLGGVSNDI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-31 45
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 2e-31 45
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-31 45
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-29 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
vraD YP_005746065.1 SalX, ABC-type antimicrobial peptide transport system, involved in vancomycin resistance CP001581.1.gene598.p Protein 5e-37 43
vraD YP_005746065.1 SalX, ABC-type antimicrobial peptide transport system, involved in vancomycin resistance NC_012469.1.7686878. Protein 1e-35 43
vraD YP_005746065.1 SalX, ABC-type antimicrobial peptide transport system, involved in vancomycin resistance CP001581.1.gene798.p Protein 4e-35 42