Gene Information

Name : cap5N (SAA6008_00140)
Accession : YP_005743534.1
Strain : Staphylococcus aureus JKD6008
Genome accession: NC_017341
Putative virulence/resistance : Virulence
Product : capsular polysaccharide biosynthesis protein Cap5N
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 159659 - 160546 bp
Length : 888 bp
Strand : +
Note : PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain

DNA sequence : 
ATGAGAAAAAATATTTTAATTACAGGCGTACATGGATATATCGGTAATGCTTTAAAAGATAAGCTTATTGAACAAGGACA
TCAAGTGGATCAAATTAATGTTAGGAATCAATTATGGAAGTCGACCTCGTTCAAAGGTTATGATGTTTTAATTCATACAG
CAGCTTTGGTTCACAACAATTCACCTCAAGCAAGGCTATCTGATTATATGCAAGTGAATATGTTGCTTACGAAACAATTG
GCACAAAAGGCTAAAGCTGAAGACGTTAAACAATTTATTTTTATGAGTACTATGGCAGTTTATGGAAAAGAAGGTCAGGT
TGGTAAATCAGATCAAATTGATACACAAACACCAATGAACCCTACGACCAACTATGGTATTTCCAAAAAGTTCGCTGAAC
AAGCATTACAAGAGTTGATTAGTGATTCGTTTAAAGTAGCAATTGTGAGACCACCAATGATTTATGGTGCACATTGCCCA
GGAAATTTCCAACGGTTAATGCAATTGTCAAAGCGATTGCCAATCATTCCAAATATTAATAATCAGCGGAGTGCATTATA
TATTAAACATCTGACAGCATTTATTGATCAATTAATATCATTAGAAGTGACAGGCGTGTATCATCCTCAAGATAGTTTTT
ACTTTGATACATCGTCAGTAATGTATGAAATACGTCGCCAATCGCATCGTAAAACGCTATTGATCAACATGCCTTCAATG
CTAAATAAGTATTTTAATAAGTTGTCGGTCTTTAGAAAATTATTCGGCAATTTAACATACAGCAATACTTTATATGAAAA
TAATAATGCGCTTGAAGTTATTCCTGGAAAAATGTCACTTGTTATTGCGGACATCATGGATGAAACGACAACCAAAGATA
AGGCATAA

Protein sequence : 
MRKNILITGVHGYIGNALKDKLIEQGHQVDQINVRNQLWKSTSFKGYDVLIHTAALVHNNSPQARLSDYMQVNMLLTKQL
AQKAKAEDVKQFIFMSTMAVYGKEGQVGKSDQIDTQTPMNPTTNYGISKKFAEQALQELISDSFKVAIVRPPMIYGAHCP
GNFQRLMQLSKRLPIIPNINNQRSALYIKHLTAFIDQLISLEVTGVYHPQDSFYFDTSSVMYEIRRQSHRKTLLINMPSM
LNKYFNKLSVFRKLFGNLTYSNTLYENNNALEVIPGKMSLVIADIMDETTTKDKA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cap1O AAL26668.1 type 8 capsule synthesis gene Virulence SCCcap1 Protein 2e-47 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
cap5N YP_005743534.1 capsular polysaccharide biosynthesis protein Cap5N VFG1310 Protein 9e-138 98