Gene Information

Name : lukD (SAOV_1812)
Accession : YP_005737297.1
Strain : Staphylococcus aureus ED133
Genome accession: NC_017337
Putative virulence/resistance : Virulence
Product : leukotoxin D subunit
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1908144 - 1909127 bp
Length : 984 bp
Strand : -
Note : -

DNA sequence :
ATGAAAATGAAGAAATTAGTCAAATCATCAGTTGCTACATCAATTGCATTGCTTATGCTATCGAATACAGTTGATGCAGC
TCAACATATTACACCTGTTAGCGAGAAAAAAGTAGACGATAAAATCACTTTATACAAAACGACAGCAACATCTGATAATG
ATAAATTGAATATTTCTCAAATTTTAACGTTTAATTTCATTAAGGATAAAAGTTATGACAAAGATACGTTAGTACTTAAG
GCAGCCGGAAACGTTAATTCAGGTTATAAAAAGCCTAATCCAAAAGATTACGATTACTCACAGTTTTATTGGGGCGGTAA
GTATAATGTTTCGGTTAGTTCAGAGTCAAATGATGCTGTAAATGTTGTTGACTATGCACCTAAAAATCAAAATGAAGAAT
TCCAAGTTCAACAAACATTAGGTTATTCTTATGGTGGAGATATTAATATATCTAACGGCCTATCAGGTGGATTGAATGGA
TCAAAATCATTTTCAGAAACGATAAATTATAAACAGGAAAGTTACAGAACTACGATTGATAGAAAAACAAATCATAAATC
AATTGGCTGGGGTGTTGAGGCGCACAAAATTATGAATAATGGTTGGGGACCATATGGTAGAGATAGTTATGACCCAACAT
ATGGTAATGAACTGTTTTTAGGTGGTAGACAAAGTAGTTCAAATGCTGGTCAAAATTTCTTGCCAACACATCAAATGCCT
TTATTGGCGCGTGGTAACTTTAACCCAGAATTTATAAGCGTACTTTCTCATAAACAAAATGATACAAAAAAATCTAAAAT
CAAAGTAACTTACCAAAGAGAAATGGATAGATATACTAATCAATGGAATCGACTACACTGGATTGGTAATAACTACAAAA
ATCAAAATACAGTAACGTTTACATCTACTTATGAAGTTGACTGGCAAAACCATACTGTTAAATTAATCGGTACGGATTCT
AAAGAAACTAATCCTGGAGTATAA

Protein sequence :
MKMKKLVKSSVATSIALLMLSNTVDAAQHITPVSEKKVDDKITLYKTTATSDNDKLNISQILTFNFIKDKSYDKDTLVLK
AAGNVNSGYKKPNPKDYDYSQFYWGGKYNVSVSSESNDAVNVVDYAPKNQNEEFQVQQTLGYSYGGDINISNGLSGGLNG
SKSFSETINYKQESYRTTIDRKTNHKSIGWGVEAHKIMNNGWGPYGRDSYDPTYGNELFLGGRQSSSNAGQNFLPTHQMP
LLARGNFNPEFISVLSHKQNDTKKSKIKVTYQREMDRYTNQWNRLHWIGNNYKNQNTVTFTSTYEVDWQNHTVKLIGTDS
KETNPGV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lukD NP_374926.1 leukotoxin, LukD Virulence vSa¥â Protein 4e-140 99
lukD YP_186707.1 leukotoxin LukD Virulence vSa¥â Protein 5e-140 99
lukD NP_646584.1 leukotoxin Virulence vSa¥â Protein 5e-140 99
lukD YP_001332752.1 leukocidin LukD precursor Virulence vSa¥â Protein 5e-140 99
lukD YP_494459.1 leukotoxin LukD Virulence vSa¥â Protein 5e-140 99
SAKOR_01767 YP_008491955.1 Leukocidin F subunit lukD Virulence vSa¥â Protein 4e-140 99
lukD NP_372343.2 leukotoxin F-subunit Virulence vSa¥â Protein 4e-140 99
SAOV_1908 YP_005737353.1 Panton-Valentine leukocidin LukF-PV chain precursor Virulence ¥ÕSa3 Protein 1e-116 85
lukF-PV YP_494078.1 Panton-Valentine leukocidin, LukF-PV Virulence ¥ÕSa2 Protein 4e-114 83
lukF NP_646195.1 Panton-Valentine leukocidin chain F precursor Virulence ¥ÕSa2 Protein 4e-114 83

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
lukD YP_005737297.1 leukotoxin D subunit VFG1276 Protein 2e-114 83
lukD YP_005737297.1 leukotoxin D subunit VFG1275 Protein 1e-111 76