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Name : join (SATW20_00780) Accession : YP_005730101.1 Strain : Staphylococcus aureus TW20 Genome accession: NC_017331 Putative virulence/resistance : Resistance Product : metallo-beta-lactamase superfamily protein (pseudogene) Function : - COG functional category : - COG ID : - EC number : - Position : 82796 - 84130 bp Length : 1335 bp Strand : - Note : CDS contains a nonsense mutation (ochre) after codon 312 DNA sequence : TTGTTTTTCAAACAATTTTATGAAGACAATTTTTCACAAGCATCTTATTTAATTGGATGTCAACGTACAGGAGAAGCAAT GATTATTGACCCTATACGAGATTTAACAAAATATTTAAAAGTTGCAGATAAAGAAGGATTCACAATTACTAAAGCTGCAG AAACACATATTCATGCTGATTTTGCTTCAGGTATTAGAGATGTGGCAAATAAATTGAATGCAAGTATATACGTATCTGAT GAAGGTAAAGATGAATTTAATTATAAAAATATGCCTAAACAAACACATTTCGTTAAGCATCAAGATATTATCTATTTAGG AAAGATTAAATTAGAAGTCTTACACACTCCAGGCCATCCCCCTGAGAGTATTAGTTTTTTACTTACTGACGAAGGTGGGG GTTCCAGTATACCAATGGGATTATTTAGCGGTGACTTCATCTTTGTTGGTGATGTAGGTAGACCAGATCTATTAGAAAAA GCTGTAAATGTTGAAGGTTCTACAAAAATCGGAGCAAAACAAATGTATCAGTCCATACAATTTGCTGCAACATTACCAGA CTATATTCAAATTTGGCCAGGTCATGGTGCAGGGAGTCCTTGTGGTAAAGCGCTAGGTTCATTACCTACAACTACTTTGG GTTATGAGAAAATAAACAACTGGGCTTTTAATGTTAAAGATGAAACTTCATTTATCGAAACTTTAACACTCAATCAGCCA GCTCCACCACACCATTTTTCACAAATGAAAAAAATAAATCAATTTGGTATGCAAATGTACCAACCATATAATGTTTACCC TAGTTCAAGCAATACACAAACTGCTTTTGATCTTCGAAGTAAAGAAGCATTCCATGGTGGTCATATGCATGGAACTATCA ATATTCCTTTTAATAAAACTTTTATAAATCAAATTGGTTGGTATTTAGATTATGACTAAGATATTGAATTAATTGGCGAT AAATCTACCGTTCAACAAGCTATTCATGCTTTACAATTAATTGGTTTTGAAAATGTAAAAAGTTACCGTTTGCCACAAAC AAATATCGTCACATCATCTATTCATAGTTCTGAAATGACTGGTGAAGAACATAATGTATTAGATGTTCGTAATGATGATG AATGGCGTAAAGGTCATTTAAAACAAGCAATTCATATTCCTCACGGTAAACTTTTAAATGAAGATATACCTTTCGATAAA AATGACCTAATTTATGTACATTGTCAATCAGGTGTTAGAAGTTCAATAGCGGTAGGAATATTAGAATATAAAGGATTTAC GAATATTGTTAACGTTAGAGGTGGCTATCAACATTTACCAGCATTTTTAAAATAG Protein sequence : MFFKQFYEDNFSQASYLIGCQRTGEAMIIDPIRDLTKYLKVADKEGFTITKAAETHIHADFASGIRDVANKLNASIYVSD EGKDEFNYKNMPKQTHFVKHQDIIYLGKIKLEVLHTPGHPPESISFLLTDEGGGSSIPMGLFSGDFIFVGDVGRPDLLEK AVNVEGSTKIGAKQMYQSIQFAATLPDYIQIWPGHGAGSPCGKALGSLPTTTLGYEKINNWAFNVKDETSFIETLTLNQP APPHHFSQMKKINQFGMQMYQPYNVYPSSSNTQTAFDLRSKEAFHGGHMHGTINIPFNKTFINQIGWYLDYDDIELIGDK STVQQAIHALQLIGFENVKSYRLPQTNIVTSSIHSSEMTGEEHNVLDVRNDDEWRKGHLKQAIHIPHGKLLNEDIPFDKN DLIYVHCQSGVRSSIAVGILEYKGFTNIVNVRGGYQHLPAFLK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| SAV0046 | NP_370570.1 | hypothetical protein | Not tested | Type-II SCCmec | Protein | 5e-148 | 100 |
| SA0043 | NP_373283.1 | hypothetical protein | Not tested | Type-II SCCmec | Protein | 5e-148 | 100 |
| unnamed | BAC57482.1 | hypothetical protein | Not tested | Type-IIIinv SCCmec | Protein | 4e-148 | 100 |
| unnamed | BAB83478.1 | - | Not tested | SCC 12263 | Protein | 2e-166 | 71 |
| unnamed | BAA86645.1 | hypothetical protein | Not tested | Type-I SCCmec | Protein | 6e-167 | 71 |
| SACOL0046 | YP_184956.1 | metallo-beta-lactamase | Not tested | Type-I SCCmec | Protein | 8e-167 | 71 |
