Gene Information

Name : SFxv_4604 (SFxv_4604)
Accession : YP_005729810.1
Strain : Shigella flexneri 2002017
Genome accession: NC_017328
Putative virulence/resistance : Unknown
Product : IS1 orfB
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4436718 - 4437113 bp
Length : 396 bp
Strand : +
Note : -

DNA sequence : 
GTGATTGTCTGCGCTGAAATGGACGAACATTGGGGCTACGTCGGTGCTAAATCACGTCAGCGCTGGCTGTTTTACGCGTA
TGACAGGATACGGAGGACGGTTGTGGCGCACGTCTTCGGTGAACGCACTCTGGCCACACTGGAGCGTCTTCTGAGCCTGC
TGTCGGCCTTTGAGGTCGTGGTATGGATGACGGATGGCTGGCCGCTGTATGAATCACGCCTGAAGGGAAAGCTGCACGTT
ATCAGCAAGCGTTACACTCAGCGCATTGAGCGACATAATCTGAATCTGAGACAACATCTGGCAAGGCTGGTACGGAAGTC
ACTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAA

Protein sequence : 
MIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTLATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHV
ISKRYTQRIERHNLNLRQHLARLVRKSLSFSKSVELHDKVIGHYLNIKHYQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
insB NP_709463.1 IS1 ORF2 Not tested SHI-2 Protein 1e-49 100
tnpH AAD44742.1 TnpH Not tested SHI-2 Protein 2e-49 99
S4059 NP_839227.1 IS1 orfB Not tested SHI-2 Protein 3e-49 99
Z1192 NP_286727.1 IS1 protein InsB Not tested TAI Protein 1e-48 98
Z1632 NP_287135.1 IS1 protein InsB Not tested TAI Protein 1e-48 98
insB ADD91744.1 transposase Not tested PAI-I AL862 Protein 2e-48 97
insB NP_709451.1 IS1 ORF2 Not tested SHI-2 Protein 4e-49 97
EC042_4085 YP_006098368.1 transposase Not tested Tn2411 Protein 3e-48 92
EC042_4113 YP_006098397.1 transposase Not tested Tn2411 Protein 3e-48 92
insB NP_458736.1 insertion element IS1 protein InsB Not tested SPI-7 Protein 3e-48 92
InsB (Tn1) CAJ77072.1 Transposase Not tested AbaR1 Protein 1e-45 91

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SFxv_4604 YP_005729810.1 IS1 orfB VFG0612 Protein 1e-49 97