Gene Information

Name : SFxv_4060 (SFxv_4060)
Accession : YP_005729324.1
Strain : Shigella flexneri 2002017
Genome accession: NC_017328
Putative virulence/resistance : Unknown
Product : IS1 ORF2
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3866703 - 3867206 bp
Length : 504 bp
Strand : -
Note : -

DNA sequence :
ATGTCGCGCCAGTGCACGCATTATGGGCGTTGGCCTCAACACGGTTTTACGTCACTTAAAAAACTCAGGCCGCAGTCGGT
AACCTCGCGCATACAACCGGGCAGTGATGTGATTGTCTGCGCTGAAATGGACGAACATTGGGGCTACGTCGGTGCTAAAT
CACGTCAGCGCTGGCTGTTTTACGCGTATGACAGGATACGGAGGACGGTTGTGGCGCACGTCTTCGGTGAACGCACTCTG
GCCACACTGGAGCGTCTTCTGAGCCTGCTGTCGGCCTTTGAGGTCGTGGTATGGATGACGGATGGCTGGCCGCTGTATGA
ATCACGCCTGAAGGGAAAGCTGCACGTTATCAGCAAGCGTTACACTCAGCGCATTGAGCGACATAATCTGAATCTGAGAC
AACATCTGGCAAGGCTGGTACGGAAGTCACTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAGGTCATCGGGCATTAT
CTGAACATAAAACACTATCAGTAA

Protein sequence :
MSRQCTHYGRWPQHGFTSLKKLRPQSVTSRIQPGSDVIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTL
ATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLVRKSLSFSKSVELHDKVIGHY
LNIKHYQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
S4059 NP_839227.1 IS1 orfB Not tested SHI-2 Protein 5e-68 100
tnpH AAD44742.1 TnpH Not tested SHI-2 Protein 4e-68 100
insB NP_709451.1 IS1 ORF2 Not tested SHI-2 Protein 9e-68 99
insB NP_709463.1 IS1 ORF2 Not tested SHI-2 Protein 1e-49 99
Z1192 NP_286727.1 IS1 protein InsB Not tested TAI Protein 4e-67 99
Z1632 NP_287135.1 IS1 protein InsB Not tested TAI Protein 4e-67 99
aec38 AAW51721.1 InsB Not tested AGI-3 Protein 2e-52 99
insB ADD91744.1 transposase Not tested PAI-I AL862 Protein 7e-63 93
EC042_4085 YP_006098368.1 transposase Not tested Tn2411 Protein 1e-62 89
EC042_4113 YP_006098397.1 transposase Not tested Tn2411 Protein 1e-62 89
insB NP_458736.1 insertion element IS1 protein InsB Not tested SPI-7 Protein 1e-62 89
InsB (Tn1) CAJ77072.1 Transposase Not tested AbaR1 Protein 4e-60 88

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SFxv_4060 YP_005729324.1 IS1 ORF2 VFG0612 Protein 3e-68 99