Gene Information

Name : SFxv_4028 (SFxv_4028)
Accession : YP_005729299.1
Strain : Shigella flexneri 2002017
Genome accession: NC_017328
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3842151 - 3842612 bp
Length : 462 bp
Strand : +
Note : -

DNA sequence : 
ATGGATGAAAATGCTTTAAGGTTTGCCTCATACTGGCGCAACTCGCTTGCAGATGCTGAGTCAGGAAAGGGCTGTTTTGA
ACGGAAAGACGCCCAAAATTTCACTCACTGGCATGGGATAGCGGCGGGACGTCTTGACGAAGCGATTGTCAATAAATTTT
TTAAGGGAGAAAAAGACGATGTCGAAACTGTCAATGTCATCTTACGCCCAAAAGTTTATTTCCGGTTACTGCAGCATGGT
AAGGACCGTTCCGCAGGCACGCCTGATATTGTTACACCGATAGTGACGCCAGCCTTGCTAAGCCGTGAGGGTTTTTTATA
TCCGACGCCAGCGACCTCCATTCCCAGAGACCTGCTTGAACCTTTGCCAAAAGGAGCATTTTCGATTGGTGAGATTGGGC
AGTATGACAAATACAAGACGACCCATACTGATCCTACCCACGTAATGTGGACACGGCCCTAA

Protein sequence : 
MDENALRFASYWRNSLADAESGKGCFERKDAQNFTHWHGIAAGRLDEAIVNKFFKGEKDDVETVNVILRPKVYFRLLQHG
KDRSAGTPDIVTPIVTPALLSREGFLYPTPATSIPRDLLEPLPKGAFSIGEIGQYDKYKTTHTDPTHVMWTRP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
shiB NP_839236.1 hypothetical protein Virulence SHI-2 Protein 2e-69 100
shiB NP_709439.1 hypothetical protein Virulence SHI-2 Protein 2e-69 100
shiB AAD44732.1 ShiB Virulence SHI-2 Protein 4e-69 99
shiB AAK71629.1 ShiB Not tested SHI-3 Protein 2e-61 96

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SFxv_4028 YP_005729299.1 hypothetical protein VFG0600 Protein 6e-70 100
SFxv_4028 YP_005729299.1 hypothetical protein VFG1077 Protein 6e-62 96