Gene Information

Name : qseB (SFxv_3366)
Accession : YP_005728689.1
Strain : Shigella flexneri 2002017
Genome accession: NC_017328
Putative virulence/resistance : Virulence
Product : Two component transcriptional regulator, winged helix family precursor
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3200635 - 3201294 bp
Length : 660 bp
Strand : +
Note : -

DNA sequence : 
ATGCGAATTTTACTGATAGAAGATGACATGCTGATTGGTGACGGCATCAAAACTGGCCTTAGTAAAATGGGTTTTAGTGT
CGACTGGTTTACACAAGGTCGTCAGGGAAAAGAGGCGCTTTATAGCGCACCTTATGATGCGGTGATCCTGGATTTAACCT
TACCAGGCATGGATGGTCGCGATATTTTGCGCGAATGGCGAGAGAAAGGTCAGCGTGAGCCGGTACTGAACCTGACCGCG
CGTGATGCGTTAGCGGAACGTGTAGAAGGGCTGCGTCTGGGAGCTGACGATTATCTGTGTAAACCTTTTGCGTTGATAGA
AGTCGCCGCCAGGCTGGAGGCTCTGATGCGCCGAACCAACGGCCAGGCCAGCAACGAGCTGCGCCACGGTAACGTCATGC
TCGACCCCGGCAAACGTATCGCCACGCTGGCTGGCGAACCCTTAACACTGAAACCAAAAGAATTTGCCCTGCTGGAATTA
CTGATGCGTAACGCTGGTCGGGTACTGCCGCGCAAACTGATTGAAGAGAAACTGTATACCTGGGACGAAGAGGTCACCAG
TAATGCCGTTGAAGTGCATGTGCATCATCTGCGACGCAAACTCGGTAGTGATTTTATTCGTACCGTGCATGGTATTGGCT
ACACATTAGGTGAGAAATGA

Protein sequence : 
MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDILREWREKGQREPVLNLTA
RDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLEL
LMRNAGRVLPRKLIEEKLYTWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGEK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 9e-40 47

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
qseB YP_005728689.1 Two component transcriptional regulator, winged helix family precursor BAC0487 Protein 2e-39 44
qseB YP_005728689.1 Two component transcriptional regulator, winged helix family precursor BAC0638 Protein 2e-30 44
qseB YP_005728689.1 Two component transcriptional regulator, winged helix family precursor BAC0083 Protein 2e-36 43
qseB YP_005728689.1 Two component transcriptional regulator, winged helix family precursor BAC0347 Protein 2e-33 42
qseB YP_005728689.1 Two component transcriptional regulator, winged helix family precursor NC_002516.2.879194.p Protein 4e-30 41
qseB YP_005728689.1 Two component transcriptional regulator, winged helix family precursor BAC0308 Protein 5e-36 41
qseB YP_005728689.1 Two component transcriptional regulator, winged helix family precursor BAC0197 Protein 9e-36 41
qseB YP_005728689.1 Two component transcriptional regulator, winged helix family precursor BAC0111 Protein 7e-34 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
qseB YP_005728689.1 Two component transcriptional regulator, winged helix family precursor VFG0473 Protein 1e-39 46
qseB YP_005728689.1 Two component transcriptional regulator, winged helix family precursor VFG1390 Protein 6e-32 42