Gene Information

Name : SFxv_3131 (SFxv_3131)
Accession : YP_005728479.1
Strain : Shigella flexneri 2002017
Genome accession: NC_017328
Putative virulence/resistance : Unknown
Product : IS3 orfB
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2988129 - 2988995 bp
Length : 867 bp
Strand : +
Note : -

DNA sequence :
ATGAAGTATGTCTTTATTGAAAAACATCAGGCTGAGTTCAGCATCAAAGCAATGTGCCGCGTGCTCCGGGTGGCCCGCAG
CGGCTGGTATACGTGGTGTCAGCGGCGGACAAGGATAAGCACGCGTCAGCAGTTCCGCCAACACTGCGACAGCGTTGTCC
TCGCGGCTTTTACCCGGTCAAAACAGCGTTACGGTGCCCCACGCCTGACGGATGAACTGCGTGCTCAGGGTTACCCCTTT
AACGTAAAAACCGTGGCGGCAAGCCTGCGCCGTCAGGGACTGAGGGCAAAGGCCTCCCGGAAGTTCAGCCCGGTCAGCTA
CCGCGCACACGGCCTGCCTGTGTCAGAAAATCTGTTGGAGCAGGATTTTTACGCCAGTGGCCCGAACCAGAAGTGGCCAG
GAGACATCACGTACTTACGTACAGATGAAGGCTGGCTGTATCTGGCAGTGGTCATTGACCTGTGGTCACGTGCCGTTATT
GGCTGGTCAATGTCGCCACGCATGACGGCGCAACTGCCCTGCGATGCCCTGCAGATGGCGCTGTGGCGGCGTAAGAGGCC
CCGGAACGTTATCGTTCACACGGACCGTGGAGGCCAGTACTGTTCAGCAGATTATCAGGCGCAACTGAAACGGCATAATC
TGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGCTGAAAGTGGAA
TGTATCCATGGAGAACACTTTATCAGCCGGGAAATAATGCGGGCAACGGTGTTTAATTATATCGAATGTGATTACAATCG
GTGGCGGCGGCACAGTTGGTGTGGCGGCCTCAGTCCGGAACAATTTGAAAACCAGAACCTCGCTTAG

Protein sequence :
MKYVFIEKHQAEFSIKAMCRVLRVARSGWYTWCQRRTRISTRQQFRQHCDSVVLAAFTRSKQRYGAPRLTDELRAQGYPF
NVKTVAASLRRQGLRAKASRKFSPVSYRAHGLPVSENLLEQDFYASGPNQKWPGDITYLRTDEGWLYLAVVIDLWSRAVI
GWSMSPRMTAQLPCDALQMALWRRKRPRNVIVHTDRGGQYCSADYQAQLKRHNLRGSMSAKGCCYDNACVESFFHSLKVE
CIHGEHFISREIMRATVFNYIECDYNRWRRHSWCGGLSPEQFENQNLA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ECO111_3732 YP_003236068.1 putative IS3 transposase InsF Not tested LEE Protein 2e-132 99
unnamed AAL57581.1 transposase 1 Not tested LEE Protein 2e-133 99
unnamed AAL57519.1 transposase 1 Not tested LEE Protein 9e-134 99
insF CAC43414.1 transposase of insertion element IS3 Not tested PAI III 536 Protein 3e-113 86
Z1134 NP_286669.1 hypothetical protein Not tested TAI Protein 4e-44 43
Z1573 NP_287077.1 hypothetical protein Not tested TAI Protein 4e-44 43
tnpA1133 ACK44540.1 TnpA Not tested SGI1 Protein 2e-44 43
orfB AGK07032.1 IS1133 transposase; OrfB Not tested SGI1 Protein 2e-44 43
orfB AGK07090.1 IS1133 transposase; OrfB Not tested SGI1 Protein 2e-44 43
unnamed AAF09022.1 unknown Not tested SHI-O Protein 1e-44 42
unnamed AAQ07468.1 TnpI-like protein Not tested Not named Protein 5e-44 42
hp1 AAC61713.1 Hp1 Not tested PAI I CFT073 Protein 4e-44 42
unnamed AAB86997.1 hypothetical 31 KD protein Not tested SHI-1 Protein 4e-44 42
unnamed AAF09030.1 unknown Not tested SHI-O Protein 4e-44 42
tnpI AAD44751.1 TnpI Not tested SHI-2 Protein 4e-44 42
c3575 NP_755450.1 transposase insF Not tested PAI I CFT073 Protein 5e-44 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SFxv_3131 YP_005728479.1 IS3 orfB VFG1631 Protein 2e-113 86
SFxv_3131 YP_005728479.1 IS3 orfB VFG1706 Protein 2e-44 42