Gene Information

Name : intA (SFxv_2939)
Accession : YP_005728307.1
Strain : Shigella flexneri 2002017
Genome accession: NC_017328
Putative virulence/resistance : Unknown
Product : putative CP4-57-type integrase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2793582 - 2794823 bp
Length : 1242 bp
Strand : +
Note : -

DNA sequence : 
ATGGCAAGACAAACCAAACCTCTATCCGTTAAGGAAATCGAATCTGCTAAACCCAAGGAAGCGGACTACGTTCTCTATGA
TGGCGATGGCCTTGAGCTACTCATTAAATCCAGCGGGAGTAAAATCTGGCAGTTTCGCTACATTCGCCCTGTCACCAAGA
CACGAGCAAAGAAAAGCATAGGCCCTTACCCGTCAGTTACCCTTGCCGATGCCAGAAACTACCGTGCAGAGTCCCGCTCA
CTCCTAGCTAAACAGATTGATCCGCAGGAACATCAGCAAGAACAATTGCGTAGTTCGCTGGAAGCCAAAACCAATACTTT
CCAGCTCGTAGCTGAACGTTGGTGGAATGTGAAGAAAGCCAGTGTGACAGAGGACTATGCGGAAGATATCTGGCGCTCTC
TTGAAAGAGATGTCTTTCCTGCGATTGGCGACGTTAGCGTTACAGATATTAAAGCTCATACACTGGTTCAGGCCGTACAA
CCGGTTCAGGCCAGAGGAGCACTGGAAACGGTTCGTCGCCTGTGTCAACGTATTAATGAGGTCATGATCTATGCCCAGAA
CACAGGGCTGATTGATGCTGTTCCCAGCGTTAATATCGGTAAAGCCTTCGAAAAGCCTCAGAAAAAGAACATGCCCAGCA
TTCGACCGGATCAGCTATCTCAACTGATGCAGACAATGCGAACAGCCAGCATTAGCCTTTCCACACGCTGCCTGTTCATG
TGGCAACTTCTTACTATTACCCGCCCTGCCGAAGCGGCTGAAGCTCGCTGGGAAGAAGTAGACATAGAAGCGCAAGAGTG
GAAGATTCCCGCAGCACGCATGAAAATGAACCGCGACCATACTGTTCCATTGTCAGATGAAGCAATAGCTGTGCTGGAGA
TGATGAAACCGCTAAGCGGCAACCGAGAATTTATCTTTCCTAGCCGTATCAAGCCCAACCAGCCTATGAACAGTCAGACT
GTTAACGCCTCACTAAAACGCGCAGGTTTTGGTGGTGTGCTTGTTTCGCATGGTCTGAGATCAATTGCCAGTACGGCTCT
TAATGAACAAGGCTTTCCGCCTGATGCCATTGAGGCAGCATTGGCCCATGTGGATAAGAATGAGGTTCGTCGTGCTTATA
ACCGCAGCGATTACCTGGAACAGCGTCGCCCGATGATGCAATGGTGGGCAAATTTTGTGATGGCAGCGGATCGTGGAAGC
ATGATTGAAGGTGGGATAAAAGGAATGAAGCTAGTTGGGTGA

Protein sequence : 
MARQTKPLSVKEIESAKPKEADYVLYDGDGLELLIKSSGSKIWQFRYIRPVTKTRAKKSIGPYPSVTLADARNYRAESRS
LLAKQIDPQEHQQEQLRSSLEAKTNTFQLVAERWWNVKKASVTEDYAEDIWRSLERDVFPAIGDVSVTDIKAHTLVQAVQ
PVQARGALETVRRLCQRINEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLSQLMQTMRTASISLSTRCLFM
WQLLTITRPAEAAEARWEEVDIEAQEWKIPAARMKMNRDHTVPLSDEAIAVLEMMKPLSGNREFIFPSRIKPNQPMNSQT
VNASLKRAGFGGVLVSHGLRSIASTALNEQGFPPDAIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWANFVMAADRGS
MIEGGIKGMKLVG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC0847 NP_230494.1 phage family integrase Not tested VPI-1 Protein 9e-101 52
VC0395_A0372 YP_001216328.1 phage family integrase Not tested VPI-1 Protein 9e-101 52
int AAK20773.1 integrase Not tested VPI Protein 7e-101 52
int AAK20803.1 integrase Not tested VPI Protein 7e-101 52
unnamed AAA82714.1 integrase Not tested VPI Protein 7e-101 52
VC0516 NP_230167.1 phage integrase Not tested VSP-2 Protein 2e-100 49
VC0395_A1357 YP_001217300.1 phage family integrase Not tested VPI-2 Protein 4e-80 45
VPI2_0001 ACA01818.1 phage family integrase Not tested VPI-2 Protein 9e-81 45
VC1758 NP_231394.1 phage family integrase Not tested VPI-2 Protein 4e-80 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
intA YP_005728307.1 putative CP4-57-type integrase VFG1092 Protein 2e-80 45