Gene Information

Name : SFxv_2439 (SFxv_2439)
Accession : YP_005727860.1
Strain : Shigella flexneri 2002017
Genome accession: NC_017328
Putative virulence/resistance : Unknown
Product : IS629 ORF2
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2276145 - 2276813 bp
Length : 669 bp
Strand : +
Note : -

DNA sequence :
TTGTTACGGGAAGGTATCAGAGTGGCCAGATGCACTGTGGCACGTCTCATGGCGGTTATGGGACTTGCCGGTGTTCTCCG
GGGTAAAAAGGTCCGTACGACCATCGGCCGGAAAGCCGTTGCCGCAGGCGACCGCGTAAACCGTCAGTTCGTGGCAGAAC
GACCTGACCAGCTGTGGGTGGCTGATTTTACTTACGTCAGCACATGGCGGGGCTTCGTCTATGTGGCGTTCATCATTGAT
GTGTTTGCCGGATACATCGTGGGGTGGCGGGTCTCATCGTCCATGGAAACGACATTCGTGCTGGATGCACTGGAGCAGGC
GTTATGGGCCCGTCGACCGTCCGGCACGGTCCATCACAGTGATAAAGGTTCTCAGTATGTATCGCTGGCCTACACACAGC
GGCTTAAGGAAGCCGGATTACTGGCATCAACAGGAAGTACAGGCGACTCGTATGACAACGCGATGGCGGAGAGCATCAAT
GGTCTTTACAAATCGGAGGTAATACACCGTAAGAGCTGGAAAAACCGTGCAGAAGTGGAACTGGCCACACTCACGTGGGT
GGACTGGTATAACAATCGACGATTGCTGGAAAGGCTGGGCCACATCCCTCCGGCAGAAGCAGAAAAAGCTTATTATGCTT
CCATCGGAAACGATGATCTGGCAGCCTGA

Protein sequence :
MLREGIRVARCTVARLMAVMGLAGVLRGKKVRTTIGRKAVAAGDRVNRQFVAERPDQLWVADFTYVSTWRGFVYVAFIID
VFAGYIVGWRVSSSMETTFVLDALEQALWARRPSGTVHHSDKGSQYVSLAYTQRLKEAGLLASTGSTGDSYDNAMAESIN
GLYKSEVIHRKSWKNRAEVELATLTWVDWYNNRRLLERLGHIPPAEAEKAYYASIGNDDLAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tnpC AAD44736.1 TnpC Not tested SHI-2 Protein 1e-90 99
S4063 NP_839232.1 IS629 orfB Not tested SHI-2 Protein 2e-94 99
unnamed AAL67406.1 putative transposase Not tested PAI II CFT073 Protein 2e-97 99
c5178 NP_757026.1 transposase IS629 Not tested PAI II CFT073 Protein 2e-97 99
unnamed AAL67398.1 putative transposase Not tested PAI II CFT073 Protein 2e-97 99
Z4334 NP_289559.1 IS629 transposase Not tested OI-122 Protein 3e-93 97
ECO111_3721 YP_003236061.1 putative IS629 transposase OrfB Not tested LEE Protein 3e-96 97
ECO111_3776 YP_003236111.1 putative IS629 transposase OrfB Not tested LEE Protein 3e-96 97
IS629 CAC37926.1 transposase for IS629 Not tested LEE Protein 3e-94 96
IS629 CAI43821.1 transposase for IS629 Not tested LEE Protein 3e-94 96
IS629 CAI43909.1 transposase for IS629 1 Not tested LEE Protein 3e-94 96
ECO103_3585 YP_003223443.1 IS629 transposase OrfB Not tested LEE Protein 3e-94 96
c5213 NP_757061.1 transposase IS629 Not tested PAI II CFT073 Protein 4e-96 96
Z1660 NP_287162.1 transposase for IS629 Not tested TAI Protein 2e-94 95
Z1221 NP_286756.1 transposase Not tested TAI Protein 2e-94 95
IS629 CAI43840.1 transposase for IS629 Not tested LEE Protein 1e-92 95
APECO1_3499 YP_854312.1 transposase for IS629 Not tested PAI I APEC-O1 Protein 2e-95 95
Z1198 NP_286733.1 transposase Not tested TAI Protein 7e-94 95
Z1638 NP_287141.1 transposase Not tested TAI Protein 7e-94 95
ORF_34 AAZ04444.1 putative IS629 transposase Not tested PAI I APEC-O1 Protein 1e-95 95
unnamed CAD42083.1 hypothetical protein Not tested PAI II 536 Protein 5e-93 93
c3594 NP_755469.1 transposase Not tested PAI I CFT073 Protein 7e-71 92
CDCE8392_1774 YP_005134308.1 transposase-like protein Not tested Not named Protein 3e-27 50
tnp7109-25 YP_001800853.1 transposase for insertion sequence Not tested Not named Protein 5e-41 48

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SFxv_2439 YP_005727860.1 IS629 ORF2 VFG1602 Protein 3e-93 93
SFxv_2439 YP_005727860.1 IS629 ORF2 VFG1715 Protein 2e-71 92