Gene Information

Name : SFxv_2009 (SFxv_2009)
Accession : YP_005727477.1
Strain : Shigella flexneri 2002017
Genome accession: NC_017328
Putative virulence/resistance : Unknown
Product : IS600 ORF2
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1882905 - 1883723 bp
Length : 819 bp
Strand : -
Note : -

DNA sequence :
ATGTGTCAGGTATTTGGTGTATCCAGGAGCGGTTATTACAACTGGGTACAGCATGAACCCTCAGACAGAAAACAAAGTGA
TGAGCGGCTAAAACTGGAGATTAAGGTGGCACATATCCGCACTCGCGAAACATATGGAACCCGGCGGCTCCAGACGGAGC
TGGCAGAGAATGGCATCATCGTTGGTCGTGACCGACTTGCACGTCTTCGTAAGGAGCTGAGGCTACGCTGTAAGCAGAAA
CGCAAGTTCAGAGCGACTACGAACCCGAACCACAATCTGCCAGTTGTGCCAAATCTGCTGAACCAGACGTTCGCTCCTAC
AGCACCAAATCAGGTCTGGGTGGCGGACCTGACGTATGTTGCCACACAGGAGGGATGGTTGTACCTCGCTGGCATCAAAG
ATGTTTATACGTGCGAAATTGTCGGCTACGCCATGGGAGAGCGCATGACAAAAGAGCTGACAGGTAAAGCCCTGTTTATG
GCGCTCAGGAGCCAGCGCCCACCTGCCGGGCTAATCCACCACTCTGATCGAGGTTCACAGTACTGCGCATACGATTACCG
GGTCATACAGGAGCAGTTTGGTCTGAAAACATCAATGTCGCGTAAAGGTAACTGTTACGACAACGCTCCGATGGAAAGCT
TCTGGGGAACGCTGAAAAATGAGAGCCTGAGCCACTATCGTTTTAATAACCGGGATGAAGCCATCTCAGTAATACGGGAA
TACATTGAGATTTTCTACAATCGTCAGCGTCGTCACTCTCGTCTGGGGAATATCTCCCCGGCAGCCTTCAGGGAAAAATA
TCATCAGATGGCTGCTTAA

Protein sequence :
MCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQK
RKFRATTNPNHNLPVVPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFM
ALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQFGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIRE
YIEIFYNRQRRHSRLGNISPAAFREKYHQMAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAF09022.1 unknown Not tested SHI-O Protein 2e-106 99
c3575 NP_755450.1 transposase insF Not tested PAI I CFT073 Protein 3e-107 99
unnamed AAF09030.1 unknown Not tested SHI-O Protein 3e-107 99
tnpI AAD44751.1 TnpI Not tested SHI-2 Protein 3e-107 99
unnamed AAB86997.1 hypothetical 31 KD protein Not tested SHI-1 Protein 3e-107 99
hp1 AAC61713.1 Hp1 Not tested PAI I CFT073 Protein 3e-107 99
Z1134 NP_286669.1 hypothetical protein Not tested TAI Protein 6e-107 99
unnamed AAQ07468.1 TnpI-like protein Not tested Not named Protein 8e-106 99
Z1573 NP_287077.1 hypothetical protein Not tested TAI Protein 6e-107 99
tnpA1133 ACK44540.1 TnpA Not tested SGI1 Protein 3e-38 43
orfB AGK07032.1 IS1133 transposase; OrfB Not tested SGI1 Protein 3e-38 43
orfB AGK07090.1 IS1133 transposase; OrfB Not tested SGI1 Protein 3e-38 43
insF CAC43414.1 transposase of insertion element IS3 Not tested PAI III 536 Protein 2e-35 42
unnamed AAL57581.1 transposase 1 Not tested LEE Protein 2e-36 42
ECO111_3732 YP_003236068.1 putative IS3 transposase InsF Not tested LEE Protein 3e-36 42
unnamed AAL57519.1 transposase 1 Not tested LEE Protein 4e-36 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SFxv_2009 YP_005727477.1 IS600 ORF2 VFG1706 Protein 2e-107 99
SFxv_2009 YP_005727477.1 IS600 ORF2 VFG1631 Protein 9e-36 42