Gene Information

Name : SFxv_1318 (SFxv_1318)
Accession : YP_005726848.1
Strain : Shigella flexneri 2002017
Genome accession: NC_017328
Putative virulence/resistance : Unknown
Product : IS1 orfB
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1254652 - 1255155 bp
Length : 504 bp
Strand : -
Note : -

DNA sequence :
ATGTCGCGCCAGCGCACGCATTATGGGCGTTGGCCTCAACACGGTTTTACGTCACTTAAAAAACTCAGGCCGCAGTCGGT
AACCTCGCGCATACAACCGGGCAGTGATGTGATTGTCTGCGCTGAAATGGACGAACATTGGGGCTACGTCGGTGCTAAAT
CACGTCAGCGCTGGCTGTTTTACGCGTATGACAGGATACGGAGGACGGTTGTGGCGCACGTCTTCGGTGAACGCACTCTG
GCCACACTGGAGCGTCTTCTGAGCCTGCTGTCGGCCTTTGAGGTCGTGGTATGGATGACGGATGGCTGGCCGCTGTATGA
ATCACGCCTGAAGGGAAAGCTGCACGTTATCAGCAAGCGTTACACTCAGCGCATTGAGCGACATAATCTGAATCTGAGAC
AACATCTGGCAAGGCCGGTACGGAAGTCACTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAGGTCATCGGGCATTAT
CTGAACATAAAACACTATCAGTAA

Protein sequence :
MSRQRTHYGRWPQHGFTSLKKLRPQSVTSRIQPGSDVIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTL
ATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARPVRKSLSFSKSVELHDKVIGHY
LNIKHYQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
S4059 NP_839227.1 IS1 orfB Not tested SHI-2 Protein 5e-66 99
insB NP_709463.1 IS1 ORF2 Not tested SHI-2 Protein 4e-49 99
tnpH AAD44742.1 TnpH Not tested SHI-2 Protein 4e-66 99
aec38 AAW51721.1 InsB Not tested AGI-3 Protein 4e-51 99
Z1192 NP_286727.1 IS1 protein InsB Not tested TAI Protein 4e-65 98
Z1632 NP_287135.1 IS1 protein InsB Not tested TAI Protein 4e-65 98
insB NP_709451.1 IS1 ORF2 Not tested SHI-2 Protein 1e-65 98
insB ADD91744.1 transposase Not tested PAI-I AL862 Protein 5e-63 93
EC042_4085 YP_006098368.1 transposase Not tested Tn2411 Protein 8e-63 89
EC042_4113 YP_006098397.1 transposase Not tested Tn2411 Protein 8e-63 89
insB NP_458736.1 insertion element IS1 protein InsB Not tested SPI-7 Protein 8e-63 89
InsB (Tn1) CAJ77072.1 Transposase Not tested AbaR1 Protein 3e-60 88

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SFxv_1318 YP_005726848.1 IS1 orfB VFG0612 Protein 3e-66 98