Gene Information

Name : SFxv_1164 (SFxv_1164)
Accession : YP_005726713.1
Strain : Shigella flexneri 2002017
Genome accession: NC_017328
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1126457 - 1126831 bp
Length : 375 bp
Strand : +
Note : -

DNA sequence :
ATGAAAACATTATCCGACACACATGTACGGGAGGTATCTCGCTGCCCGTCTCCCGTCACCATCTGGCAGACACTGCTCAT
CCGACTGCTGGACCAGCATTATGGCCTCACACTGAATGACACACCGTTTGTCGATGAACGTGTGATTGAGCAGCATATTG
AGGCAGGCATTTCACTGTGTGATGCAGTTAATTTTCTCGTGGAAAAATACACGCTGGTGCGTACCGACCAGCCGGGATTC
AGCACCTGTCCCCGCTCTCAGTTAATAAACAGTATTGATATCCTCCGGGCTCGCCGGGCGACCGGCCTGATGACCCGCGA
CAATTACAGAACGGTAAATAACATTACCCTGGGTAAGTATCCGGAGGCGAAATGA

Protein sequence :
MKTLSDTHVREVSRCPSPVTIWQTLLIRLLDQHYGLTLNDTPFVDERVIEQHIEAGISLCDAVNFLVEKYTLVRTDQPGF
STCPRSQLINSIDILRARRATGLMTRDNYRTVNNITLGKYPEAK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL08478.1 unknown Not tested SRL Protein 1e-54 99
z5091 CAD33789.1 Z5091 protein Not tested PAI I 536 Protein 2e-52 94
unnamed AAC31486.1 L0007 Not tested LEE Protein 2e-51 93
unnamed ACU09433.1 conserved hypothetical protein Not tested LEE Protein 2e-51 93
Z5091 NP_290242.1 hypothetical protein Not tested LEE Protein 3e-51 93
ECs4539 NP_312566.1 hypothetical protein Not tested LEE Protein 3e-51 93
aec76 AAW51759.1 Aec76 Not tested AGI-3 Protein 4e-51 92
unnamed CAI43848.1 hypothetical protein Not tested LEE Protein 4e-51 92
unnamed CAD66207.1 hypothetical protein Not tested PAI III 536 Protein 2e-49 92
yeeV ADD91699.1 YeeV Not tested PAI-I AL862 Protein 1e-50 92
unnamed AAL57575.1 unknown Not tested LEE Protein 5e-50 91
yeeV CAE85204.1 YeeV protein Not tested PAI V 536 Protein 3e-50 91
c5149 NP_756997.1 hypothetical protein Not tested PAI II CFT073 Protein 2e-50 91
unnamed AAL67389.1 L0007-like protein Not tested PAI II CFT073 Protein 2e-50 91
yeeV NP_838487.1 hypothetical protein Not tested SHI-1 Protein 4e-48 89
yeeV NP_708773.1 hypothetical protein Not tested SHI-1 Protein 4e-48 89
unnamed CAD42101.1 hypothetical protein Not tested PAI II 536 Protein 3e-50 89
unnamed AAK00482.1 unknown Not tested SHI-1 Protein 2e-48 89
unnamed AAL67342.1 intergenic-region protein Not tested PAI II CFT073 Protein 2e-48 88
yeeV YP_854325.1 hypothetical protein Not tested PAI I APEC-O1 Protein 6e-48 88
ECO103_3592 YP_003223449.1 hypothetical protein Not tested LEE Protein 7e-48 88
yeeV AAZ04461.1 conserved hypothetical protein Not tested PAI I APEC-O1 Protein 9e-47 88

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SFxv_1164 YP_005726713.1 hypothetical protein VFG1069 Protein 4e-55 99
SFxv_1164 YP_005726713.1 hypothetical protein VFG1530 Protein 7e-53 94
SFxv_1164 YP_005726713.1 hypothetical protein VFG0786 Protein 8e-52 93
SFxv_1164 YP_005726713.1 hypothetical protein VFG1682 Protein 7e-50 92
SFxv_1164 YP_005726713.1 hypothetical protein VFG0663 Protein 1e-48 89
SFxv_1164 YP_005726713.1 hypothetical protein VFG1620 Protein 1e-50 89