Gene Information

Name : SFxv_1145 (SFxv_1145)
Accession : YP_005726696.1
Strain : Shigella flexneri 2002017
Genome accession: NC_017328
Putative virulence/resistance : Unknown
Product : Integrase/recombinase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1111128 - 1112141 bp
Length : 1014 bp
Strand : +
Note : -

DNA sequence : 
ATGAAAACCGCCACTGCGCCGTTACCACCGCTGCGTTCGGTCAAGGTTCTGGACCAGTTGCGTGAGCGCATACGCTACTT
GCATTACAGCTTACGAACCGAACAGGCTTATGTCCACTGGGTTCGTGCCTTCATCCGTTTCCACGGTGTGCGTCACCCGG
CAACCTTGGGCAGCAGCGAAGTCGAGGCATTTCTGTCCTGGCTGGCGAACGAGCGCAAGGTTTCGGTCTCCACGCATCGT
CAGGCATTGGCGGCCTTGCTGTTCTTCTACGGCAAGGTGCTGTGCACGGATCTGCCCTGGCTTCAGGAGATCGGAAGACC
TCGGCCGTCGCGGCGCTTGCCGGTGGTGCTGACCCCGGATGAAGTGGTTCGCATCCTCGGTTTTCTGGAAGGCGAGCATC
GTTTGTTCGCCCAGCTTCTGTATGGAACGGGCATGCGGATCAGTGAGGGTTTGCAACTGCGGGTCAAGGATCTGGATTTC
GATCACGGCACGATCATCGTGCGGGAGGGCAAGGGCTCCAAGGATCGGGCCTTGATGTTACCCGAGAGCTTGGCACCCAG
CCTGCGCGAGCAGCTGTCGCGTGCACGGGCATGGTGGCTGAAGGACCAGGCCGAGGGCCGCAGCGGCGTTGCGCTTCCCG
ACGCCCTTGAGCGGAAGTATCCGCGCGCCGGGCATTCCTGGCCGTGGTTCTGGGTTTTTGCGCAGCACACGCATTCGACC
GATCCACGGAGCGGTGTCGTGCGTCGCCATCACATGTATGACCAGACCTTTCAGCGCGCCTTCAAACGTGCCGTAGAACA
AGCAGGCATCACGAAGCCCGCCACACCGCACACCCTCCGCCACTCGTTCGCGACGGCCTTGCTCCGCAGCGGTTACGACA
TTCGAACCGTGCAGGATCTGCTCGGCCATTCCGACGTCTCTACGACGATGATTTACACGCATGTGCTGAAAGTTGGCGGT
GCCGGAGTGCGCTCACCGCTTGATGCGCTGCCGCCCCTCACTAGTGAGAGGTAG

Protein sequence : 
MKTATAPLPPLRSVKVLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVSVSTHR
QALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILGFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDF
DHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHST
DPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHVLKVGG
AGVRSPLDALPPLTSER

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
EC042_4092 YP_006098375.1 integrase Not tested Tn2411 Protein 2e-150 100
intI1 AFL65913.1 class 1 integrase Not tested SGI1-J6 Protein 7e-113 100
unnamed ACF06155.1 class 1 integrase Not tested Tn5036-like Protein 2e-150 100
intI1 AGK07098.1 IntI1 integrase Not tested SGI1 Protein 2e-150 100
intI1 AGK06930.1 IntI1 integrase Not tested SGI1 Protein 4e-150 99
intI1 ACY75520.1 integrase Not tested Tn6060 Protein 7e-150 99
intI1 YP_005797145.1 integrase Not tested AbaR4e Protein 5e-150 99
intI1 AGK06967.1 IntI1 integrase Not tested SGI1 Protein 4e-150 99
intI1 ACY75535.1 integrase Not tested Tn6060 Protein 7e-150 99
intI1 ACN81019.1 IntI1 integrase Not tested AbaR5 Protein 5e-150 99
intI1 AGK07013.1 IntI1 integrase Not tested SGI1 Protein 4e-150 99
intI1 AGF34986.1 IntI1 integrase Not tested SGI1 Protein 7e-150 99
intI1 AGK07071.1 IntI1 integrase Not tested SGI1 Protein 4e-150 99
intI1 AGF35026.1 IntI1 integrase Not tested SGI1 Protein 7e-150 99
intI1 AFV53119.1 IntI1 integrase Not tested AbGRI2-1 Protein 4e-150 99
intI1 CAB46685.1 DNA integrase Not tested Not named Protein 7e-150 99
unnamed AAL08437.1 Tn21 integrase IntI1 Not tested SRL Protein 4e-149 99
intI1 AGK36642.1 IntI1 integrase Not tested AbaR26 Protein 4e-150 99
intI1 ABB48427.1 IntI1 integrase Not tested SGI1 Protein 4e-150 99
intI1 AAK02045.1 integrase Not tested SGI1 Protein 7e-150 99
intI CAJ77082.1 Integrase Not tested AbaR1 Protein 4e-150 99
intI1 ABZ01842.1 IntI1 Not tested SGI2 Protein 7e-150 99
intI YP_001844881.1 integrase Not tested AbaR20 Protein 5e-150 99
intI1 AGF35060.1 IntI1 integrase Not tested SGI1 Protein 4e-150 99
intI CAJ77028.1 Integrase Not tested AbaR1 Protein 7e-150 99
intI1 YP_005797130.1 integrase Not tested AbaR4e Protein 5e-150 99
int1 YP_005160012.1 integrase Not tested Not named Protein 1e-121 99

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SFxv_1145 YP_005726696.1 Integrase/recombinase VFG1028 Protein 2e-149 99