Gene Information

Name : SFxv_1138a (SFxv_1138a)
Accession : YP_005726689.1
Strain : Shigella flexneri 2002017
Genome accession: NC_017328
Putative virulence/resistance : Resistance
Product : putative transcriptional regulator TetD
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1104848 - 1105264 bp
Length : 417 bp
Strand : -
Note : -

DNA sequence : 
ATGTATATTGAACAGCATTCTCGCTATCAAAATAAAGCTAATAACATCCAATTAAGATATGATGATAAGCAGTTTCATAC
AACGGTTATCAAAGATGTTCTATTATGGATTGAACATAATTTAGATCAGTCTTTACTGCTTGATGATGTGGCGAATAAAG
CGGGTTATACCAAGTGGTATTTTCAGCGGCTGTTCAAAAAAGTAACAGGGGTCACACTGGCTAGCTATATTCGTGCTCGT
CGTTTGACGAAAGCGGCTGTTGAGTTGAGGTTGACGAAAAAAACTATCCTTGAGATCGCATTAAAATATCAATTTGATTC
CCAACAATCTTTTACACGTCGATTTAAGTACATTTTTAAGGTTACACCAAGTTATTATCGGCGTAATAAATTATGGGAAT
TGGAGGCAATGCACTGA

Protein sequence : 
MYIEQHSRYQNKANNIQLRYDDKQFHTTVIKDVLLWIEHNLDQSLLLDDVANKAGYTKWYFQRLFKKVTGVTLASYIRAR
RLTKAAVELRLTKKTILEIALKYQFDSQQSFTRRFKYIFKVTPSYYRRNKLWELEAMH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tetD AEA34665.1 tetracycline resistance protein D Not tested Not named Protein 1e-59 100
tetD AAL08447.1 putative transcriptional regulator TetD Not tested SRL Protein 1e-59 100
soxS YP_219131.1 DNA-binding transcriptional regulator SoxS Not tested SPI-4 Protein 6e-21 50

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SFxv_1138a YP_005726689.1 putative transcriptional regulator TetD NC_010558.1.6276025. Protein 5e-60 100
SFxv_1138a YP_005726689.1 putative transcriptional regulator TetD BAC0371 Protein 4e-22 51
SFxv_1138a YP_005726689.1 putative transcriptional regulator TetD CP000034.1.gene4505. Protein 8e-22 51
SFxv_1138a YP_005726689.1 putative transcriptional regulator TetD NC_002695.1.914293.p Protein 4e-22 51
SFxv_1138a YP_005726689.1 putative transcriptional regulator TetD CP001138.1.gene4488. Protein 2e-21 50
SFxv_1138a YP_005726689.1 putative transcriptional regulator TetD CP001138.1.gene612.p Protein 8e-22 48
SFxv_1138a YP_005726689.1 putative transcriptional regulator TetD CP001918.1.gene327.p Protein 3e-20 47
SFxv_1138a YP_005726689.1 putative transcriptional regulator TetD CP000647.1.gene4499. Protein 3e-20 47
SFxv_1138a YP_005726689.1 putative transcriptional regulator TetD CP000647.1.gene1624. Protein 1e-21 47
SFxv_1138a YP_005726689.1 putative transcriptional regulator TetD CP001918.1.gene2033. Protein 4e-21 45
SFxv_1138a YP_005726689.1 putative transcriptional regulator TetD BAC0560 Protein 2e-21 43
SFxv_1138a YP_005726689.1 putative transcriptional regulator TetD CP001138.1.gene1637. Protein 3e-21 43
SFxv_1138a YP_005726689.1 putative transcriptional regulator TetD NC_002695.1.917339.p Protein 2e-21 43
SFxv_1138a YP_005726689.1 putative transcriptional regulator TetD CP000034.1.gene1596. Protein 1e-21 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SFxv_1138a YP_005726689.1 putative transcriptional regulator TetD VFG1038 Protein 4e-60 100
SFxv_1138a YP_005726689.1 putative transcriptional regulator TetD VFG0585 Protein 2e-21 50