Gene Information

Name : SM11_pC1183 (SM11_pC1183)
Accession : YP_005725065.1
Strain :
Genome accession: NC_017327
Putative virulence/resistance : Unknown
Product : TRm1b transposase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1078145 - 1078975 bp
Length : 831 bp
Strand : +
Note : -

DNA sequence : 
ATGAAGGCCGTCTGCGAAACTCTAGGTGTCGCCCGGTCGAATATCGCTGCGCGTGCCGCAAATTCCCCTTCCAGAGCCAG
AGGACGTCCACCACTCCCGGATCGGGAACTGGTGGAGGATATCAAGGCCATCATCGCCGACATGCCCACCTACGGCTATC
GGCGTGTCCATGCCATCCTGCGCCGCAATGCCCGGAAAGACGGGCGTTCGTGGCCCAATGCCAAGCGCGTTTACCGGGTC
ATGAAGCTGCACAATCTGCTGCTGGTGCGCCACACCGGAGCGGCCGATGATCGCCTCCACGACGGTCAGGTCGCTGTCGA
ACGTTCGAACATCAGATGGTGCTCCGACGGCTTCGAGATCGGCTGCGACAACAAGGAGAAGGTCCGGGTCGCCTTCGCTC
TCGACTGCTGCGACCGAGAGGCAATCGCCCATGTCGCCACCACCGAGGGCATCAAGAGCCAGGACGTGAAGGACCTCGTG
ATCACCGCAGTGGAGAACCGCTTCGGCCGCATCAACATGCTGTCCGAGCCCATCGAATGGCTCACCGACAACGGCTCCTG
CTTCATCGCCAGGGACACCGCGTCCTTGCTGCGCGACATCGGCATGGAACCGTGCACGACGCCGGTGCGCAGCCCGCAAT
CGAACGGCATGGCCGAGGCCTTCGTCAAAACCTTCAAGCGCGATTACGTCGCCGTGAACCCCACCCCGGATGCCGAAACC
GTCATGGCGCAACTGCCGTTCTGGTTCGAGCATTACAACAATCTTCACCCGCACAGCGCCTTAGGGTATCAATCTCCACG
CGAGTTCATCAGCTCGAAATCTCAAGCCTGA

Protein sequence : 
MKAVCETLGVARSNIAARAANSPSRARGRPPLPDRELVEDIKAIIADMPTYGYRRVHAILRRNARKDGRSWPNAKRVYRV
MKLHNLLLVRHTGAADDRLHDGQVAVERSNIRWCSDGFEIGCDNKEKVRVAFALDCCDREAIAHVATTEGIKSQDVKDLV
ITAVENRFGRINMLSEPIEWLTDNGSCFIARDTASLLRDIGMEPCTTPVRSPQSNGMAEAFVKTFKRDYVAVNPTPDAET
VMAQLPFWFEHYNNLHPHSALGYQSPREFISSKSQA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL67379.1 transposase-like protein Not tested PAI II CFT073 Protein 2e-58 57
insD YP_002414033.1 insertion element IS2 transposase InsD Not tested Not named Protein 3e-58 57
SF2985 NP_708759.1 insertion element IS2 transposase InsD Not tested SHI-1 Protein 4e-58 55
tnpF AAD44739.1 TnpF Not tested SHI-2 Protein 3e-58 55
unnamed CAC39284.1 hypothetical protein Not tested LPA Protein 2e-58 55
unnamed CAC39283.1 hypothetical protein Not tested LPA Protein 8e-60 55
SF3721 NP_709460.1 IS2 transposase TnpB Not tested SHI-2 Protein 3e-58 55
S4061 NP_839230.2 insertion element IS2 transposase InsD Not tested SHI-2 Protein 2e-58 55
S3189 NP_838472.2 insertion element IS2 transposase InsD Not tested SHI-1 Protein 9e-58 55
S4050 NP_839218.2 insertion element IS2 transposase InsD Not tested SHI-2 Protein 3e-58 55
SF3708 NP_709447.1 IS2 transposase TnpB Not tested SHI-2 Protein 3e-58 55
ECO111_3773 YP_003236109.1 putative IS2 transposase InsAB Not tested LEE Protein 1e-56 54
aec49 AAW51732.1 Aec49 Not tested AGI-3 Protein 3e-57 53

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SM11_pC1183 YP_005725065.1 TRm1b transposase VFG1732 Protein 1e-58 57
SM11_pC1183 YP_005725065.1 TRm1b transposase VFG0649 Protein 2e-58 55
SM11_pC1183 YP_005725065.1 TRm1b transposase VFG0621 Protein 1e-58 55
SM11_pC1183 YP_005725065.1 TRm1b transposase VFG0608 Protein 1e-58 55