Gene Information

Name : SM11_pC1182 (SM11_pC1182)
Accession : YP_005725064.1
Strain :
Genome accession: NC_017327
Putative virulence/resistance : Unknown
Product : TRm1a transposase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1077756 - 1078148 bp
Length : 393 bp
Strand : +
Note : -

DNA sequence :
ATGACTAGCATCAAGCATAAGATAGAGGTCCTCTCCGGGCCTGAACGACGGCGGCGCTGGAGCACGGCAGAGAAGCTGGC
GATCATCCACGAGACCTATGAGGCGGACGCGACGGTGAGCATCGTCGCGCGTCGGCACGGCATCCAGCCGAACCAGTTGT
TCGCCTGGCGCAAGCTGGCGTCCCAAGGGGCACTAACGGCGACTGCCGCCGAAGAGGAGGTCGTTCCGGCTTCCGAATAC
CGGGCGCTTCAGGCCCAGGTGAAGGAGTTGCAGCGCCTGCTGGGCAAGAAGACGATGGAGAGCGAAATCCTCAAGGAAGC
CCTCGAAATCGCCGGAGGCCCAAAAAAACGGATGTTGCGCTCGATCTCTCTTCCGAGGGGAATTTTGGAATGA

Protein sequence :
MTSIKHKIEVLSGPERRRRWSTAEKLAIIHETYEADATVSIVARRHGIQPNQLFAWRKLASQGALTATAAEEEVVPASEY
RALQAQVKELQRLLGKKTMESEILKEALEIAGGPKKRMLRSISLPRGILE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
S4060 NP_839229.2 insertion sequence 2 OrfA protein Not tested SHI-2 Protein 9e-22 58
tnpG AAD44740.1 TnpG Not tested SHI-2 Protein 7e-22 58
unnamed AAL57520.1 IS2 transposase Not tested LEE Protein 7e-22 58
st02 CAC81840.1 ST02 protein Not tested LEE II Protein 7e-22 58
ECO26_5247 YP_003232129.1 insertion sequence 2 OrfA protein Not tested LEE Protein 9e-22 58
S3188 NP_838471.2 insertion sequence 2 OrfA protein Not tested SHI-1 Protein 9e-22 58
S4049 NP_839217.2 insertion sequence 2 OrfA protein Not tested SHI-2 Protein 3e-21 57
SF2984 NP_708758.3 IS2 ORF1 Not tested SHI-1 Protein 4e-22 57
aec50 AAW51733.1 Aec50 Not tested AGI-3 Protein 3e-22 57
SF3709 NP_709448.3 IS2 ORF1 Not tested SHI-2 Protein 2e-21 56
SF3722 NP_709461.3 IS2 ORF1 Not tested SHI-2 Protein 2e-21 56
unnamed AAL67376.1 insertion sequence protein Not tested PAI II CFT073 Protein 3e-18 54
insC YP_002414034.1 IS2 insertion element repressor InsA; KpLE2 phage-like element Not tested Not named Protein 3e-18 53

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SM11_pC1182 YP_005725064.1 TRm1a transposase VFG0648 Protein 1e-22 57
SM11_pC1182 YP_005725064.1 TRm1a transposase VFG0622 Protein 4e-22 56
SM11_pC1182 YP_005725064.1 TRm1a transposase VFG0609 Protein 4e-22 56
SM11_pC1182 YP_005725064.1 TRm1a transposase VFG1733 Protein 8e-19 53