Gene Information

Name : SM11_pD1315 (SM11_pD1315)
Accession : YP_005723648.1
Strain :
Genome accession: NC_017326
Putative virulence/resistance : Virulence
Product : putative ABC transporter
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1403396 - 1404367 bp
Length : 972 bp
Strand : -
Note : TRAP-type C4-dicarboxylate transport system, periplasmic component

DNA sequence : 
ATGAAAACGGGAATGATTTCGCTCGCGCTTGCGGGGCTGCTGATGGCGTCGCAAGCCATGGCTCAAGAGGCGCGCACATT
GCGCCTGGGAATGCAGGGTACGGCCGGAGACCCGCAATTCGAGGGCGTCACCGAGGCCGCGCGCATCATCAAGGAAAAAT
CGGGCGGCCGGCTGACGCTGGAAATCTTCCCGAATTCTCAGCTCGGTACATTCACCGAGATGATGGAGCAGGTGACGCTC
GGCGAGCTCGACTTCACGCTGAACCCGTTTGGCGGGATGGACGCCTGGGTTCCCCGGGCGGTCTTGGCGAGCACCGCCTA
TGTCGTCGGCGACTTCGATCACCTTCAGAAGATCATCGCCTCCGACTGGGGTAAGGGGATCGTCGACGAGATGCGGACCG
AGCACAAGTGGCGCATGGTCGACTCCTGGTACTTCGGGACGCGGCACACGACGGCAAAGAAACCGATCGAAAAGCCTGCC
GATTTCGCGGGCATGAAGCTGCGCGTCCCGAACTCCGCGCCGCTTCTTACCTGGGCGAAGGCGATGGGCGCGAGCCCCAC
GCCGGTCGCATTCGCCGAGGTCTATCTTGCACTCCAGACCAATCAGGTGGACGGCCAGGAAAACCCGCTGCCCATCATCG
ACTCGATGAAGTTCACCGAGGTCCAGTCCCATGTCTCCCTGACTGGGCATCTGGTGCAGGACCAGGTCATCCTTATGTCG
GAAGACACGTGGAATGCGCTCAAGCCCGCCGACCAGAAGGTCGTGATGGAGGCATTCGAGGCGGGCGGTGCCCTCAACGA
CAAGTTGGTCACCGACAAGGAAGCGAGCCTCGTCAGCGATTTTCGCGAGCGCGGCATCACCGTGGTCGAGCCCGACAAGG
CGGCGTTCCAGGAAGCGATGAAGCCCGTCTATGCCGATCTCGACGCAAAATTCGGTGCCGACACGGTGAAGACGCTGCTC
GATCTCCGTTAA

Protein sequence : 
MKTGMISLALAGLLMASQAMAQEARTLRLGMQGTAGDPQFEGVTEAARIIKEKSGGRLTLEIFPNSQLGTFTEMMEQVTL
GELDFTLNPFGGMDAWVPRAVLASTAYVVGDFDHLQKIIASDWGKGIVDEMRTEHKWRMVDSWYFGTRHTTAKKPIEKPA
DFAGMKLRVPNSAPLLTWAKAMGASPTPVAFAEVYLALQTNQVDGQENPLPIIDSMKFTEVQSHVSLTGHLVQDQVILMS
EDTWNALKPADQKVVMEAFEAGGALNDKLVTDKEASLVSDFRERGITVVEPDKAAFQEAMKPVYADLDAKFGADTVKTLL
DLR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC1779 NP_231414.1 C4-dicarboxylate-binding protein Not tested VPI-2 Protein 9e-67 45
dctP-1 YP_001217320.1 C4-dicarboxylate-binding periplasmic protein Not tested VPI-2 Protein 9e-67 45
VPI2_0027c ACA01844.1 C4-dicarboxylate-binding periplasmic protein Not tested VPI-2 Protein 9e-67 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SM11_pD1315 YP_005723648.1 putative ABC transporter VFG1112 Protein 4e-67 45