Gene Information

Name : sitD (SM11_chr3208)
Accession : YP_005721706.1
Strain : Sinorhizobium meliloti SM11
Genome accession: NC_017325
Putative virulence/resistance : Virulence
Product : Manganese ABC transporter permease
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3220040 - 3220894 bp
Length : 855 bp
Strand : +
Note : ABC-type Mn2+/Zn2+ transport systems, permease components

DNA sequence : 
ATGATGCCTTCGCTCGACATGCTCCTTGCCGTCTTCGAGTTCGAGTTCATGCGCAATGCGCTGCTGATCTCGGTCCTGGT
TGCGATTCCGACGGCGATGCTCTCCTGCTTCCTGGTCCTCAAGGGCTGGTCGCTGATGGGCGACGCGATCTCGCATGCGG
TCTTCCCCGGCGTCGTCGTTTCCTACATCGTCGGCCTGCCGCTCGCCGTCGGCGCCTTTACGGCCGGCATGTGCTGCGCG
CTTCTGACCGGCTACCTGAAGGAAAACAGCCGCATCAAGCAGGACACGGTGATGGGCGTCGTCTTTTCCGGCATGTTCGG
CCTTGGCCTTGTGCTCTACACCAAGATCCAGAGCGACGTGCATCTCGATCACATCCTTTTCGGCGACATGCTAGGCATCG
GCTGGGGCGACATTCTGGAGACGGGCCTCATCGCGCTTTTCGCCGCCGGCATTCTCGGCTTGAAATGGCGCGACCTGCTG
CTCCACGCCTTCGATCCGGCTCAGGCGCGCGCCATCGGTCTGAGGGTCGGCTGGCTGCATTACGGACTGCTCGCGATCCT
GTCGCTGACGATCGTCGGTGCGCTCAAGGCGGTCGGGCTGATCCTGGCCATCGCCATGCTCATTGCCCCCGGCGCGATCG
CCTATCTCGTCACGCGGACATTCGGCGCCATGCTGGCGGTCGCGGTGATGGTCGCCGTCGCCGCCTCCTTCTGCGGCGTC
TATCTCTCCTTCTTCATCGACAGCGCACCGGCACCCACCATCGTCCTTCTGATGACGGCGATGTTCCTGCTCGCCTTCGC
CTATTCCACCTGGAAGATTGCGCGTGCCGAGGCGCAGCGGACAAGCGTGGAATAG

Protein sequence : 
MMPSLDMLLAVFEFEFMRNALLISVLVAIPTAMLSCFLVLKGWSLMGDAISHAVFPGVVVSYIVGLPLAVGAFTAGMCCA
LLTGYLKENSRIKQDTVMGVVFSGMFGLGLVLYTKIQSDVHLDHILFGDMLGIGWGDILETGLIALFAAGILGLKWRDLL
LHAFDPAQARAIGLRVGWLHYGLLAILSLTIVGALKAVGLILAIAMLIAPGAIAYLVTRTFGAMLAVAVMVAVAASFCGV
YLSFFIDSAPAPTIVLLMTAMFLLAFAYSTWKIARAEAQRTSVE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD NP_461785.1 permease Virulence SPI-1 Protein 6e-77 67
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 4e-77 67
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 7e-77 66
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 6e-77 66
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 6e-77 66

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitD YP_005721706.1 Manganese ABC transporter permease BAC0352 Protein 3e-77 67
sitD YP_005721706.1 Manganese ABC transporter permease BAC0442 Protein 6e-58 57
sitD YP_005721706.1 Manganese ABC transporter permease BAC0441 Protein 7e-37 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitD YP_005721706.1 Manganese ABC transporter permease VFG0528 Protein 3e-77 67