Gene Information

Name : sitC (SM11_chr3207)
Accession : YP_005721705.1
Strain : Sinorhizobium meliloti SM11
Genome accession: NC_017325
Putative virulence/resistance : Virulence
Product : Manganese ABC transporter permease
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3219186 - 3220043 bp
Length : 858 bp
Strand : +
Note : ABC-type Mn2+/Zn2+ transport systems, permease components

DNA sequence : 
ATGATCGCCACGCTCATCGAGCCGTTCGCCTATAGCTACATGGTGAATGCCATGTGGGTAAGCGCGCTGGTGGGCGCGGT
CTGCGCGTTTCTTTCGGCCTATCTCATGCTGAAGGGCTGGTCGCTGATCGGCGATGCGCTCTCCCACTCGATCGTGCCGG
GCGTCGCCGGGGCCTATATGCTCGGGCTTCCCTTCTCGCTCGGCGCCTTCTTTTCCGGTGCCCTTGCCGCCGGTGCCATG
CTGTTCCTCAACCAGCGCACGCGGCTGAAGGAGGACACGATCATCGGTTTGATCTTCACCTCCTTCTTCGGCCTCGGCCT
GTTCATGGTCTCTCTGTCGCCGACCTCGGTGAACATTCAGACGATCGTGCTCGGCAATATCCTCGCCATCACCCCGGCCG
ACACGTTGCAGCTCGCCATCATCGGCGTCGTCTCACTCATGATCCTGTCCGCCAAGTGGAAGGACCTGATGGTGACCTTC
TTCGACGAAAGCCACGCCCGCTCCATCGGCATCAACACCACCTTTCTGAAGGTGCTCTTCTTCACGCTGCTCTCGGCCTC
GACGGTGGCGGCGCTGCAGACGGTCGGCGCCTTCCTGGTCGTCGCCATGGTCGTCACCCCCGGCGCGACCGCCTATCTCC
TGACCGACCGTTTTCCGCGGCTGATCGTGATCAGCATCGCGATCGGGGCCCTGACGAGCTTCGTCGGCGCCTATGCGAGC
TACTTCCTCGACGGCGCAACCGGCGGCATCATCATCGTGCTGCAGACCGCGATCTTCCTGTTCGCCTTCGTACTTGCCCC
GAAACACGGGCTGCTCGCCGCCCGCCGCCGCGCATCCGAGGCTCTGGAGACCGCATGA

Protein sequence : 
MIATLIEPFAYSYMVNAMWVSALVGAVCAFLSAYLMLKGWSLIGDALSHSIVPGVAGAYMLGLPFSLGAFFSGALAAGAM
LFLNQRTRLKEDTIIGLIFTSFFGLGLFMVSLSPTSVNIQTIVLGNILAITPADTLQLAIIGVVSLMILSAKWKDLMVTF
FDESHARSIGINTTFLKVLFFTLLSASTVAALQTVGAFLVVAMVVTPGATAYLLTDRFPRLIVISIAIGALTSFVGAYAS
YFLDGATGGIIIVLQTAIFLFAFVLAPKHGLLAARRRASEALETA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-80 79
sitC NP_461784.1 permease Virulence SPI-1 Protein 1e-80 79
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 9e-81 79
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 9e-81 79
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 9e-81 79

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitC YP_005721705.1 Manganese ABC transporter permease BAC0351 Protein 6e-81 79
sitC YP_005721705.1 Manganese ABC transporter permease BAC0441 Protein 2e-69 69

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitC YP_005721705.1 Manganese ABC transporter permease VFG0527 Protein 5e-81 79