Gene Information

Name : sitB (SM11_chr3206)
Accession : YP_005721704.1
Strain : Sinorhizobium meliloti SM11
Genome accession: NC_017325
Putative virulence/resistance : Virulence
Product : Manganese ABC transporter ATPase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3218254 - 3219189 bp
Length : 936 bp
Strand : +
Note : ABC-type Mn/Zn transport systems, ATPase component

DNA sequence : 
ATGAACCTTCAGGAAAAGGCCCGCGCCTATCCGGGAGCAGCTCCGCAAGAGGAGGATGGCGGCATTCGCGTCAGCGGCGC
TACGGTGACCTACCGCAACGGCCACCGGGCGCTGCGCGACGCCTCCTTCGAAATCCCGACGGGCACCATCGCGGCCCTTG
TCGGCGTCAACGGCAGCGGCAAGTCGACGCTGTTCAAAGCTATCATGGGCTTCGTCCGGCTGGCCAAGGGCGACATTTCG
ATCCTGGGCCTCACCGTGCCGCAGGCACTGAGACAGAACCTCGTCGCCTATGTCCCGCAGGCCGAAGAGGTCGACTGGAA
TTTTCCCGTCCTCGTCGAAGACGTGGTGATGATGGGCCGTTACGGCCATATGAACATGCTGCGCATCCCGAAAAAGGCCG
ATCACGAGGCGGTCGAGACGGCGCTGGCGCGGGTCGGCATGAGCGAGTTCCGCAAGCGCCAGATCGGCGAGCTTTCCGGC
GGTCAGAAGAAGCGGGTCTTCCTGGCCCGGGCGCTTGCCCAGAACGGCCGCGTCATCCTGCTCGACGAGCCTTTCACCGG
GGTCGACGTGAAAACGGAGGACGCGATCATCCGCCTGCTCGTCGCGCTTCGCGAAGAAGGCCGTGTGATGCTCGTCTCCA
CCCATAATCTCGGAAGCGTGCCGGAATTCTGCGACCGCACCATCCTTCTGAAAAATACGGTGCTCGCCTACGGTCCCACG
GAAACCACCTTCACCCGCGAAAACCTGGAGCTCGCCTTCGGGGGCGTCCTGCGTCACTTCGTGCTCGGCGGAGAGAACCT
CCATGACGATGCCGATCCACGCCAGCTCTCGGTCATCAGCGACGACGAGCGTCCGCTCGTCATGTATGGCGCCCGCGACC
GCATGGTTGCGCAGCCGGCCAAACCGGAATCGGAATCCGAGGCGGACTCCGAATGA

Protein sequence : 
MNLQEKARAYPGAAPQEEDGGIRVSGATVTYRNGHRALRDASFEIPTGTIAALVGVNGSGKSTLFKAIMGFVRLAKGDIS
ILGLTVPQALRQNLVAYVPQAEEVDWNFPVLVEDVVMMGRYGHMNMLRIPKKADHEAVETALARVGMSEFRKRQIGELSG
GQKKRVFLARALAQNGRVILLDEPFTGVDVKTEDAIIRLLVALREEGRVMLVSTHNLGSVPEFCDRTILLKNTVLAYGPT
ETTFTRENLELAFGGVLRHFVLGGENLHDDADPRQLSVISDDERPLVMYGARDRMVAQPAKPESESEADSE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 3e-91 71
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 3e-91 71
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 8e-90 70
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 7e-90 70
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 6e-90 70

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitB YP_005721704.1 Manganese ABC transporter ATPase BAC0350 Protein 4e-90 70
sitB YP_005721704.1 Manganese ABC transporter ATPase BAC0440 Protein 7e-90 64
sitB YP_005721704.1 Manganese ABC transporter ATPase BAC0400 Protein 6e-46 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitB YP_005721704.1 Manganese ABC transporter ATPase VFG0526 Protein 3e-90 70