Gene Information

Name : SM11_chr1985 (SM11_chr1985)
Accession : YP_005720509.1
Strain : Sinorhizobium meliloti SM11
Genome accession: NC_017325
Putative virulence/resistance : Resistance
Product : MFS-type transport protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1953950 - 1955197 bp
Length : 1248 bp
Strand : -
Note : Permeases of the major facilitator superfamily

DNA sequence :
ATGCTCGACAAGAAATTCGTGAGACGCGGTCTGTTCCTCGTCTTCCTCATTCTCTTCCTCGACATCATGGGCATCGCGAT
CATCGTGCCGGTGTTGCCGACCTATCTCGAGGAACTGACCGGCGCGGATATCGGCGAGGCCGCGGTCGACGGTGGATGGC
TGTTGCTCGTCTACTCGGCGATGCAGTTTCTCTTCGCACCGCTTATCGGGAATCTGAGCGATCGATTCGGGCGTCGGCCG
GTCCTGCTTGCGTCCGTGCTGACCTTTGCGCTCGACAACCTGATCTGCGCGCTTGCGACCAGCTATTGGATGCTCTTCAT
CGGGCGCAGCCTTGCCGGCATCAGCGGCGCGAGCTTCGGCACGGCATCCGCCTACATTGCCGATGTCAGCGACGATGAGA
ATCGCGCCAAGAACTTCGGGCTGATCGGCATTGCCTTCGGCACCGGTTTTGCGCTCGGCCCGGTCATCGGAGGTTTCCTC
GGCGAATTGGGCCCGAGAGTGCCCTTTTATGGTGCGGCAGCGCTTTCATTCCTCAATTTCATCATGGGGGTCTTTCTCCT
GCCCGAGACGCTCGCCCCGGCCAACCGGCGGCGCTTCGAATGGCACCGGGCAAACCCGCTCGGCGCGCTCAAGCAGATGC
GCCATTACCCGGGCATCGGCTGGGTAGGCCTCGTCTTCTTCCTCTACTGGCTGGCTCACGCCGTCTACCCGGCCGTCTGG
TCCTTCGTCGGCTCCTATCGCTACGGGTGGAGCGAAGGGCAGATCGGGCTTTCGCTGGGGATCTTCGGCGTCGGCGGCGC
AATCGTGATGGCGCTGGTGCTCCCGCGTGTCGTGCCGGCACTGGGAGAAAGGCGAACGGCGGCACTCGGGCTCACCTTCA
CGGCCCTCGGGATGGCGGGCTATGCGGCCGCCTGGGAGGGGTGGATGGTCTACGCGGTGATCGTCGCGACCGCGCTCGAA
AGCCTAGCCGATCCACCGCTCCGCAGCATAGCCTCCGTCCATGTCCCGCCGTCGGCACAGGGCGAGCTGCAAGGTGCGCT
CACCAGCATATCGAGCATTACGACGATCCTCGGACCTCTGATGTTCACGCAGATTTTCGCCTTTTTCACCGACCCTGCAG
CCGCCCATAGCTTTGCCGGCGCTCCCTATGCCCTGGCAGGCTGCTTGATCGTCGCCGCGCTGGTGATCTTCCTTGCCAAG
GTCGGCGCCGGCCGGGGAGGCGCCGTCCGCGGTGCCGTGCGAGCGTGA

Protein sequence :
MLDKKFVRRGLFLVFLILFLDIMGIAIIVPVLPTYLEELTGADIGEAAVDGGWLLLVYSAMQFLFAPLIGNLSDRFGRRP
VLLASVLTFALDNLICALATSYWMLFIGRSLAGISGASFGTASAYIADVSDDENRAKNFGLIGIAFGTGFALGPVIGGFL
GELGPRVPFYGAAALSFLNFIMGVFLLPETLAPANRRRFEWHRANPLGALKQMRHYPGIGWVGLVFFLYWLAHAVYPAVW
SFVGSYRYGWSEGQIGLSLGIFGVGGAIVMALVLPRVVPALGERRTAALGLTFTALGMAGYAAAWEGWMVYAVIVATALE
SLADPPLRSIASVHVPPSAQGELQGALTSISSITTILGPLMFTQIFAFFTDPAAAHSFAGAPYALAGCLIVAALVIFLAK
VGAGRGGAVRGAVRA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tetA YP_006098396.1 tetracycline resistance protein Not tested Tn2411 Protein 4e-49 41
tetA(A) ACK44537.1 TetA(A) Not tested SGI1 Protein 3e-49 41
tetA(A) AGK07027.1 TetA(A) Not tested SGI1 Protein 3e-49 41
tetA(A) AGK07085.1 TetA(A) Not tested SGI1 Protein 3e-49 41
tetA CAJ77066.1 Tetracycline resistance protein Not tested AbaR1 Protein 2e-49 41
tetA(A) ACN81011.1 TetA(A) Not tested AbaR5 Protein 3e-49 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SM11_chr1985 YP_005720509.1 MFS-type transport protein NC_011586.7045189.p0 Protein 2e-47 41
SM11_chr1985 YP_005720509.1 MFS-type transport protein AY264780.2.gene3.p01 Protein 6e-48 41
SM11_chr1985 YP_005720509.1 MFS-type transport protein AF534183.gene.p01 Protein 1e-49 41
SM11_chr1985 YP_005720509.1 MFS-type transport protein NC_010410.6002597.p0 Protein 1e-49 41
SM11_chr1985 YP_005720509.1 MFS-type transport protein CP001485.1.gene2821. Protein 1e-49 41