Gene Information

Name : phoB (SM11_chr0141)
Accession : YP_005718688.1
Strain : Sinorhizobium meliloti SM11
Genome accession: NC_017325
Putative virulence/resistance : Virulence
Product : phosphate regulon transcriptional regulatory protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 152430 - 153113 bp
Length : 684 bp
Strand : +
Note : Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

DNA sequence : 
ATGTTGCCGAAGATTGCCGTAGTCGAAGATGAGGAAGCCCTAAGCGTTCTCCTGCGCTACAATCTCGAGGCAGAAGGCTT
CGAGGTCGATACGATCCTTCGCGGCGACGAGGCGGAGATCCGCCTGCAGGAGCGCCTGCCCGACCTTCTCATCCTCGATT
GGATGCTGCCCGGGGTTTCCGGCATCGAGCTCTGCCGCAGGCTGCGCCAGCGGCCGGAAACGGAGCGCCTGCCGATCATC
ATGCTGACGGCGCGCGGCGAGGAGAGCGAGCGCGTGCGGGGCCTTGCCACCGGGGCCGACGATTACGTCGTCAAGCCCTT
CTCGACGCCGGAACTGATGGCGAGGGTCAAGGCTATGCTCAGGCGCGCCAAGCCCGAGGTTCTGTCGACGCTCCTGCGCT
GCGGCGATATCGAGCTCGACCGGGAGACGCACCGCGTCCACCGCCGCAGCCGTGAAGTGCGCCTCGGCCCGACGGAGTTC
CGGCTGCTGGAATTTCTCATGTCCTCACCGGGGCGCGTCTTCTCCCGTTCACAGCTCCTGGACGGTGTCTGGGGGCACGA
CATCTATGTCGACGAACGGACCGTGGACGTCCATGTCGGACGTCTGCGCAAGGCACTGAACTTCTCCAACATGCCCGACG
TCATCCGGACGGTGCGCGGCGCGGGCTATTCGCTGGAGAGCTGA

Protein sequence : 
MLPKIAVVEDEEALSVLLRYNLEAEGFEVDTILRGDEAEIRLQERLPDLLILDWMLPGVSGIELCRRLRQRPETERLPII
MLTARGEESERVRGLATGADDYVVKPFSTPELMARVKAMLRRAKPEVLSTLLRCGDIELDRETHRVHRRSREVRLGPTEF
RLLEFLMSSPGRVFSRSQLLDGVWGHDIYVDERTVDVHVGRLRKALNFSNMPDVIRTVRGAGYSLES

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 9e-35 43
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 1e-34 43
mprA YP_005680459.1 response regulator mprA Not tested PiCp 3 Protein 6e-27 41
mprA YP_005682550.1 response regulator mprA Not tested PiCp 3 Protein 6e-27 41
tcsR1 YP_003782583.1 two-component system transcriptional regulatory protein Not tested PiCp 3 Protein 6e-27 41
mprA YP_005684640.1 response regulator mprA Not tested PiCp 3 Protein 6e-27 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
phoB YP_005718688.1 phosphate regulon transcriptional regulatory protein HE999704.1.gene2815. Protein 4e-40 44
phoB YP_005718688.1 phosphate regulon transcriptional regulatory protein AE000516.2.gene3505. Protein 9e-34 44
phoB YP_005718688.1 phosphate regulon transcriptional regulatory protein NC_002952.2859905.p0 Protein 1e-41 43
phoB YP_005718688.1 phosphate regulon transcriptional regulatory protein NC_003923.1003749.p0 Protein 2e-41 43
phoB YP_005718688.1 phosphate regulon transcriptional regulatory protein NC_007622.3794472.p0 Protein 1e-41 43
phoB YP_005718688.1 phosphate regulon transcriptional regulatory protein NC_002745.1124361.p0 Protein 2e-41 43
phoB YP_005718688.1 phosphate regulon transcriptional regulatory protein NC_009782.5559369.p0 Protein 2e-41 43
phoB YP_005718688.1 phosphate regulon transcriptional regulatory protein NC_002951.3237708.p0 Protein 2e-41 43
phoB YP_005718688.1 phosphate regulon transcriptional regulatory protein NC_002758.1121668.p0 Protein 2e-41 43
phoB YP_005718688.1 phosphate regulon transcriptional regulatory protein NC_009641.5332272.p0 Protein 2e-41 43
phoB YP_005718688.1 phosphate regulon transcriptional regulatory protein NC_013450.8614421.p0 Protein 2e-41 43
phoB YP_005718688.1 phosphate regulon transcriptional regulatory protein NC_007793.3914279.p0 Protein 2e-41 43
phoB YP_005718688.1 phosphate regulon transcriptional regulatory protein CP001918.1.gene3444. Protein 1e-32 42
phoB YP_005718688.1 phosphate regulon transcriptional regulatory protein NC_010400.5986590.p0 Protein 1e-34 41
phoB YP_005718688.1 phosphate regulon transcriptional regulatory protein NC_011595.7057856.p0 Protein 1e-35 41
phoB YP_005718688.1 phosphate regulon transcriptional regulatory protein NC_010410.6002989.p0 Protein 1e-35 41
phoB YP_005718688.1 phosphate regulon transcriptional regulatory protein NC_012469.1.7685629. Protein 4e-36 41
phoB YP_005718688.1 phosphate regulon transcriptional regulatory protein NC_002516.2.879194.p Protein 8e-27 41
phoB YP_005718688.1 phosphate regulon transcriptional regulatory protein CP000647.1.gene2531. Protein 7e-33 41
phoB YP_005718688.1 phosphate regulon transcriptional regulatory protein BAC0039 Protein 6e-32 41
phoB YP_005718688.1 phosphate regulon transcriptional regulatory protein CP000034.1.gene2186. Protein 6e-32 41
phoB YP_005718688.1 phosphate regulon transcriptional regulatory protein NC_002695.1.916589.p Protein 5e-32 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
phoB YP_005718688.1 phosphate regulon transcriptional regulatory protein VFG1390 Protein 3e-36 45
phoB YP_005718688.1 phosphate regulon transcriptional regulatory protein VFG1563 Protein 5e-35 43
phoB YP_005718688.1 phosphate regulon transcriptional regulatory protein VFG1702 Protein 5e-35 43