Gene Information

Name : SM11_chr0130 (SM11_chr0130)
Accession : YP_005718678.1
Strain : Sinorhizobium meliloti SM11
Genome accession: NC_017325
Putative virulence/resistance : Virulence
Product : putative major antigenic peptide PEB
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 140468 - 141304 bp
Length : 837 bp
Strand : +
Note : Accessory colonization factor AcfC, contains ABC-type periplasmic domain

DNA sequence : 
ATGATGTGGCGGTCAACTACGGACAACAAGGAGAAGCCCGTGCGAATTGCAGTTCTGATTGTTCTGACGACTGTCCTTGC
CATGCCTGCTTCGGCGCAGGATACCGCACTCCATGACCCTTCGATCAGCCGCGATGCACAGGACGGGGTGATCCGTCTTT
ACGGTGCGGGCGGTCCGGACACCGCCATCCGGAAAGTCGCGGATGTCTGGACGAAGGAGACGGGCCGCAAGGTCGAAATC
ACCGCCGGACCGGAGAAGACATGGTCGAAAAAGGCGCAGGGCGATGCGGATGTCATCTGGGGCACGTCCGAACAGGCGAT
GACCGCTTTTCTCGAAACCTATAAGGGCTTCTCATCGGATCAGGTCGAGCCGATATACCTTCGTCCGGCAGTCATTGCGG
TGAAAGCGGGCAATCCCAAGGGGATCATGAAATTCGAGGACCTTCTGGCGGAAGGGACGAAAATCGTCGTAACCGAAGGA
GCCGGCGTCGCCAACACGTCGGGGACGGGTGTGTGGGAGGATATCGCGGGGCGTCTTGGCCGGCTGGAGGATGTCGCGGC
CTTCCGCAGCAACATCGTCGCTTTCGAACAGGGCTCCGGCGCAAGCTTCAAGGCGTTCAAAGCATTGGATGCAGACGCCT
GGATCACCTGGCCGAATTGGCCGCTTTCGAACCCCGACACCCTGGAGGCGGTGCCGCTGTCGAGCGATCGCGCAATATGG
CGCGACCTCAGCGTGGCCCTGGCCCCCGACGCCGATCCCGATGCAAAGGCGTTTCTGGATTATCTGATCTCCGATGAGGC
GCAGAAGATCATGTCCCGTGAAGGTTGGGTACGCTGA

Protein sequence : 
MMWRSTTDNKEKPVRIAVLIVLTTVLAMPASAQDTALHDPSISRDAQDGVIRLYGAGGPDTAIRKVADVWTKETGRKVEI
TAGPEKTWSKKAQGDADVIWGTSEQAMTAFLETYKGFSSDQVEPIYLRPAVIAVKAGNPKGIMKFEDLLAEGTKIVVTEG
AGVANTSGTGVWEDIAGRLGRLEDVAAFRSNIVAFEQGSGASFKAFKALDADAWITWPNWPLSNPDTLEAVPLSSDRAIW
RDLSVALAPDADPDAKAFLDYLISDEAQKIMSREGWVR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
acfC AAK20768.1 accessory colonization factor AcfC Virulence VPI Protein 2e-36 44
acfC AAK20798.1 accessory colonization factor AcfC Virulence VPI Protein 2e-36 44
acfC AAA82706.1 AcfC Virulence VPI Protein 2e-36 44
VC0841 NP_230489.1 accessory colonization factor AcfC Virulence VPI-1 Protein 2e-36 44
acfC YP_001216322.1 accessory colonization factor AcfC Virulence VPI-1 Protein 2e-36 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SM11_chr0130 YP_005718678.1 putative major antigenic peptide PEB VFG0105 Protein 1e-36 44
SM11_chr0130 YP_005718678.1 putative major antigenic peptide PEB VFG0839 Protein 3e-35 42