Gene Information

Name : SinmeB_5339 (SinmeB_5339)
Accession : YP_005717356.1
Strain :
Genome accession: NC_017324
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 261296 - 261988 bp
Length : 693 bp
Strand : -
Note : KEGG: smd:Smed_5362 two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduc

DNA sequence : 
ATGACCGCAGAGCGTATCCTCGTCGTGGACGACGAGCCGCAGATCCAGCGCTTCTTGCGCCCGGCGCTCGCAGCCGCCGG
CTACGAGGTGATAGAGGCGGCAAACGGCGCGCAAGCACTCAAGGCGGCTGTGACGGCGGCGCCGGACGTCGTGATCCTGG
ATCTCGGCCTTCCCGACATGGACGGCAAGGATGTGGTGGCCAATATCCGCGCCTGGTCCCAAGTCCCGATCATCATCCTT
TCGGCGCGTGACCGTGAAAGCGAGAAGATCGCTGCCCTCGACCTCGGCGCCGACGACTACATCGAGAAACCCTTCGGGAT
CGGCGAACTGACGGCGCGTATCCGAGCGGCGCTGCGCCATCGCATCCAGATGGCAGGAGGCCAGGCGCAGCTGTCAGCGG
ACGGCCTTTCGATCGACATGGTCAAACGCGTCGTGACGCGCGACGGCGCGGCGCTCCGGCTGACGCCAAAGGAATACGAC
CTTCTCGTTATGCTCGCACATCACGCGGGTCGCGTGGTTACCCACAGGACGCTGCTTACCTCCGTCTGGGGCCTCGCCCA
CGGGGAGGACCTGCATTACCTGAGAGTTTTCATCGGTCAGCTGCGTGGCAAGATCGAACGCGATCCCGGCAATCCGAAGA
TCGTCCGCACCGAACCCGGCGTCGGTTACCGCTTCGTCGGCGACGAGGATTGA

Protein sequence : 
MTAERILVVDDEPQIQRFLRPALAAAGYEVIEAANGAQALKAAVTAAPDVVILDLGLPDMDGKDVVANIRAWSQVPIIIL
SARDRESEKIAALDLGADDYIEKPFGIGELTARIRAALRHRIQMAGGQAQLSADGLSIDMVKRVVTRDGAALRLTPKEYD
LLVMLAHHAGRVVTHRTLLTSVWGLAHGEDLHYLRVFIGQLRGKIERDPGNPKIVRTEPGVGYRFVGDED

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
EF0571 NP_814337.1 DNA-binding response regulator Not tested Not named Protein 3e-43 44
ef0091 AAM75294.1 EF0091 Not tested Not named Protein 2e-43 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SinmeB_5339 YP_005717356.1 winged helix family two component transcriptional regulator AE000516.2.gene3505. Protein 5e-32 43
SinmeB_5339 YP_005717356.1 winged helix family two component transcriptional regulator NC_012469.1.7685629. Protein 2e-36 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SinmeB_5339 YP_005717356.1 winged helix family two component transcriptional regulator VFG1390 Protein 4e-34 41