Gene Information

Name : SinmeB_4374 (SinmeB_4374)
Accession : YP_005716477.1
Strain :
Genome accession: NC_017323
Putative virulence/resistance : Virulence
Product : TRAP dicarboxylate transporter subunit DctP
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 994261 - 995232 bp
Length : 972 bp
Strand : -
Note : KEGG: smd:Smed_3836 TRAP dicarboxylate transporter, DctP subunit; TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Extracellular solute-binding protein, family 7, bacteria

DNA sequence : 
ATGAAAACGGGAATGATTTCGCTCGCGCTTGCGGGGCTGCTGATGGCGTCGCAAGCCATGGCTCAAGAGGCGCGCACATT
GCGCCTGGGAATGCAGGGTACGGCGGGAGACCCGCAATTCGAGGGCGTCACCGAGGCCGCGCGCATCATCAAGGAAAAAT
CGGGCGGCCGGCTGACGCTGGAAATCTTCCCGAATTCTCAGCTCGGTACATTCACCGAGATGATGGAGCAGGTGACGCTC
GGCGAGCTCGACTTCACGCTGAACCCGTTTGGCGGGATGGACGCCTGGGTTCCCCGGGCGGTGTTGGCGAGCACCGCCTA
TGTCGTCGGCGACTTCGATCACCTTCAGAAGATCATCGCCTCCGACTGGGGTAAGGGGATCGTCGACGAGATGCGGACCG
AGCACAAGTGGCGCATGGTCGACTCCTGGTACTTCGGGACGCGGCACACGACGGCAAAGAAACCGATCGAAAAGCCTGCC
GATTTCGCGGGCATGAAGCTGCGCGTCCCGAACTCGGCGCCGCTTCTTACCTGGGCGAAGGCGATGGGCGCGAGCCCCAC
GCCGGTCGCATTCGCCGAAGTCTATCTGGCACTCCAGACCAATCAGGTGGACGGCCAGGAAAACCCGCTGCCCATCATCG
ACTCGATGAAGTTCACCGAGGTCCAGTCCCATGTCTCCCTGACTGGGCATCTGGTGCAGGACCAGGTCATCCTTATGTCG
GAAGACACGTGGAATGCGCTCGAGCCCGCCGACCAGAAGGTCGTGATGGAGGCATTCGAGGCGGGCGGCGCCCTCAACGA
CAAGTTGGTCACCGACAAGGAAGCCAGCCTCGTCAGCGATTTTCGCGAGCGCGGCATCACCGTGGTCGAGCCCGACAAGG
CGGCGTTCCAGGAAGCGATGAAGCCCGTCTATGCCGATCTCGACGCAAAATTCGGTGCCGACACGGTGAAGACGCTGCTC
GATCTCCGTTAA

Protein sequence : 
MKTGMISLALAGLLMASQAMAQEARTLRLGMQGTAGDPQFEGVTEAARIIKEKSGGRLTLEIFPNSQLGTFTEMMEQVTL
GELDFTLNPFGGMDAWVPRAVLASTAYVVGDFDHLQKIIASDWGKGIVDEMRTEHKWRMVDSWYFGTRHTTAKKPIEKPA
DFAGMKLRVPNSAPLLTWAKAMGASPTPVAFAEVYLALQTNQVDGQENPLPIIDSMKFTEVQSHVSLTGHLVQDQVILMS
EDTWNALEPADQKVVMEAFEAGGALNDKLVTDKEASLVSDFRERGITVVEPDKAAFQEAMKPVYADLDAKFGADTVKTLL
DLR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
dctP-1 YP_001217320.1 C4-dicarboxylate-binding periplasmic protein Not tested VPI-2 Protein 9e-67 45
VC1779 NP_231414.1 C4-dicarboxylate-binding protein Not tested VPI-2 Protein 9e-67 45
VPI2_0027c ACA01844.1 C4-dicarboxylate-binding periplasmic protein Not tested VPI-2 Protein 7e-67 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SinmeB_4374 YP_005716477.1 TRAP dicarboxylate transporter subunit DctP VFG1112 Protein 4e-67 45