Gene Information

Name : SinmeB_4084 (SinmeB_4084)
Accession : YP_005716198.1
Strain :
Genome accession: NC_017323
Putative virulence/resistance : Virulence
Product : capsular-polysaccharide-transporting ATPase
Function : -
COG functional category : -
COG ID : -
EC number : 3.6.3.38
Position : 687355 - 688014 bp
Length : 660 bp
Strand : +
Note : KEGG: smd:Smed_4995 ABC transporter related; SMART: ATPase, AAA+ type, core

DNA sequence : 
ATGATCCGGTTCGAGCAGGCGACGAAATACGCCCGCACCAGGGGCATCAAGAAGCCGATTATCGAGGATGCATCGCTCAC
CCTCAATCGCGGGAAGAGCGTCGGCCTGCTCGGCCGCAACGGCGCCGGCAAATCGACGCTGCTCCGCCTGATCGCCGGCG
CCATCAAGCTCGACAAGGGCCGAATCATCCGCCGCGGCAAGATCTCCTGGCCGCTCGGCTTTGCAGGCAGTTTTCAGCCA
TCCATGACAGGCGAACAGAATGTGCGCTTCGTCGCCCGCATCTACGGCGTCGATACGGAGAAACTGATCGGGTATGTCGA
GGACTTTGCCGAGCTCGGTCCCTTTTTCAAGGCTCCGGTGGGCACCTATTCCTCCGGCATGAAGGCTCGCCTCGCCTTCG
GCTTGAGCATGGGCGTCAACTTCGACTATTATCTCGTCGACGAAATAACCGCCGTTGGTGACGCAAATTTTAAGAAAAAG
TGCCAGGCTGTCTTCGAGACCAGGCTGCAGGACTCGGACGTAGTCATGGTTTCGCACAGCACCGGTACAATCCGCGACTA
TTGCGATTGCGGCGTGGTGCTGGAAAAAGGAAAGATGACCTATTATGAGAATGTCGAAGACGCGATCCGCGCACACGACA
AGAATATGAAGGAAAGCTAA

Protein sequence : 
MIRFEQATKYARTRGIKKPIIEDASLTLNRGKSVGLLGRNGAGKSTLLRLIAGAIKLDKGRIIRRGKISWPLGFAGSFQP
SMTGEQNVRFVARIYGVDTEKLIGYVEDFAELGPFFKAPVGTYSSGMKARLAFGLSMGVNFDYYLVDEITAVGDANFKKK
CQAVFETRLQDSDVVMVSHSTGTIRDYCDCGVVLEKGKMTYYENVEDAIRAHDKNMKES

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
kpsT YP_854396.1 polysialic acid transport ATP-binding protein KpsT Not tested PAI I APEC-O1 Protein 5e-50 49
ctrD NP_273138.1 capsule polysaccharide export ATP-binding protein CtrD Not tested IHT-A Protein 7e-47 49
kpsT CAE85223.1 KpsT protein Virulence PAI V 536 Protein 1e-46 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SinmeB_4084 YP_005716198.1 capsular-polysaccharide-transporting ATPase VFG1449 Protein 2e-50 49
SinmeB_4084 YP_005716198.1 capsular-polysaccharide-transporting ATPase VFG0258 Protein 3e-47 49
SinmeB_4084 YP_005716198.1 capsular-polysaccharide-transporting ATPase VFG0696 Protein 8e-47 45
SinmeB_4084 YP_005716198.1 capsular-polysaccharide-transporting ATPase VFG2563 Protein 4e-45 44