Gene Information

Name : SinmeB_3643 (SinmeB_3643)
Accession : YP_005715773.1
Strain :
Genome accession: NC_017323
Putative virulence/resistance : Virulence
Product : RNA-directed DNA polymerase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 190207 - 191466 bp
Length : 1260 bp
Strand : +
Note : PFAM: Reverse transcriptase; Group II intron, maturase-specific; KEGG: rhi:NGR_b07990 putative reverse transcriptase/maturase

DNA sequence :
ATGACTTCGGAAAGTACGACAGACAAGCCGTTTCGAATTGAGAAACGTCGAGTGTACGAAGCTTACAAAGCGGTCAAAGC
CAACCGTGGCGCGGCCGGGGTGGACGGGCAGACGCTGGAGATATTTGAGAAAGACCTTGCAGCAAACCTCTACAAGATCT
GGAATCGGATGTCCTCGGGAACCTACTTTCCGCCGCCGGTGCGCGCCGTCTCCATTCCGAAGAAGGCTGGAGGCGAAAGG
GTTTTGGGTGTGCCCACGGTCAGCGATCGGATCGCGCAGATGGTGGTCAAGCAGATGATCGAGCCGGATTTGGACTCCCT
CTTTCTTCCGGACTCCTACGGTTACAGGCCGGGAAAATCGGCCCTGGATGCTGTCGGAGTGACGCGTCAGCGGTGCTGGA
AGTATGATTGGGTTTTGGAATTCGACATCAAAGGGCTGTTTGACAATCTTCCGCATGATCTCTTGCTGAAGGCGGTCAGA
AAAGACGTCAAATGCAACTGGGCTCTGCTCTACATCGAAAGATGGCTGACTGCGCCTATGGAAAAGAACGGAGAAGTCAT
CGAGCGGTCACGCGGTACCCCACAGGGAGGCGTGGTTAGCCCGATCTTGGCGAATCTCTTTCTGCACTATGCATTTGATC
TCTGGATGACGCGGACGCATCCCGACCTTCCATGGTGTCGATATGCCGACGATGGTCTTGTTCACTGCCAGAGCGAGCAA
CAAGCCGAAGCCCTCAGGGTGGAGCTGAGTTCTCGGCTGGCAGCGTGCGGACTTCAGATGCATCCGACAAAGACCAAGAT
TGTCTACTGCAAGGATCAACGGCGCAGGGAGGCGTATCCGAATGTCACGTTCGACTTTCTCGGGTATCAGTTCCGGCCGC
GACGGGTGGCGAACACACAGCGGGACGAGTTCTTCTGTGGCTACACGCCTGCGGTCAGTCCGACGGCGCTCAAGTCGATG
CGGGCAACGATCAAAAGTTTGAACATCCCGCGGCAGACGCCGGGGACGCTGGCCGAAATAGCCAAACAGCTCAATCCACT
CCTTCGGGGATGGATTGCCTACTATGGACGGTACAGTCGTTCGGCCCTGTCCACTCTGGCTGATTACGTTAATCAGAAAC
TCAGGGCTTGGATCAGGCGAAAGTTCAAACGCTTTCAGTCCCATAAGACACGCGCCAGCCTCTTCTTGCGAAAGCTGGCG
CGGGAAAATCCGGGGCTGTTCGTGCATTGGAAGGCGTTCGGAACGAACACGTTTACCTGA

Protein sequence :
MTSESTTDKPFRIEKRRVYEAYKAVKANRGAAGVDGQTLEIFEKDLAANLYKIWNRMSSGTYFPPPVRAVSIPKKAGGER
VLGVPTVSDRIAQMVVKQMIEPDLDSLFLPDSYGYRPGKSALDAVGVTRQRCWKYDWVLEFDIKGLFDNLPHDLLLKAVR
KDVKCNWALLYIERWLTAPMEKNGEVIERSRGTPQGGVVSPILANLFLHYAFDLWMTRTHPDLPWCRYADDGLVHCQSEQ
QAEALRVELSSRLAACGLQMHPTKTKIVYCKDQRRREAYPNVTFDFLGYQFRPRRVANTQRDEFFCGYTPAVSPTALKSM
RATIKSLNIPRQTPGTLAEIAKQLNPLLRGWIAYYGRYSRSALSTLADYVNQKLRAWIRRKFKRFQSHKTRASLFLRKLA
RENPGLFVHWKAFGTNTFT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed ABR13526.1 reverse transcriptase Not tested PAGI-7 Protein 3e-118 55
unnamed CAD33771.1 putative reverse transcriptase Not tested PAI I 536 Protein 1e-86 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SinmeB_3643 YP_005715773.1 RNA-directed DNA polymerase VFG1512 Protein 8e-87 47