Gene Information

Name : SinmeB_2856 (SinmeB_2856)
Accession : YP_005714996.1
Strain : Sinorhizobium meliloti BL225C
Genome accession: NC_017322
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2991929 - 2992783 bp
Length : 855 bp
Strand : +
Note : PFAM: ABC-3; KEGG: smd:Smed_2917 ABC-3 protein

DNA sequence : 
ATGATGCCTTCGCTCGACATGCTCCTTGCCGTCTTCGAGTTCGAGTTCATGCGCAATGCGCTGCTGATCTCGGTCCTGGT
TGCGATTCCGACGGCGATGCTCTCCTGCTTCCTGGTCCTCAAGGGCTGGTCGCTGATGGGCGACGCGATCTCGCATGCGG
TCTTCCCCGGCGTCGTCGTTTCCTACATCGTCGGCCTGCCGCTCGCCGTCGGCGCCTTTACGGCCGGCATGTGCTGCGCG
CTTCTGACCGGCTACCTGAAGGAAAACAGCCGCATCAAGCAGGACACGGTGATGGGCGTCGTCTTTTCCGGCATGTTCGG
CCTTGGCCTTGTGCTCTACACCAAGATCCAGAGCGACGTGCATCTCGATCACATCCTTTTCGGCGACATGCTAGGCATCG
GCTGGGGCGACATTCTGGAGACGGGCCTCATCGCGCTTTTCGCCGCCGGCATTCTCGGCTTGAAATGGCGCGACCTGCTG
CTCCACGCCTTCGATCCGGCTCAGGCGCGCGCCATCGGTCTGAGGGTCGGCTGGCTGCATTACGGACTGCTCGCGATCCT
GTCGCTGACGATCGTCGGTGCGCTCAAGGCGGTCGGGCTGATCCTGGCCATCGCCATGCTCATTGCCCCCGGCGCGATCG
CCTATCTCGTCACGCGGACATTCGGCGCCATGCTGGCGGTCGCGGTGATGGTCGCCGTCGCCGCCTCCTTCTGCGGCGTC
TATCTCTCCTTCTTCATCGACAGCGCACCGGCACCCACCATCGTCCTTCTGATGACGGCGATGTTCCTGCTCGCCTTCGC
CTATTCCACCTGGAAGATTGCGCGTGCCGAGGCGCAGCGGACAAGCGTGGAATAG

Protein sequence : 
MMPSLDMLLAVFEFEFMRNALLISVLVAIPTAMLSCFLVLKGWSLMGDAISHAVFPGVVVSYIVGLPLAVGAFTAGMCCA
LLTGYLKENSRIKQDTVMGVVFSGMFGLGLVLYTKIQSDVHLDHILFGDMLGIGWGDILETGLIALFAAGILGLKWRDLL
LHAFDPAQARAIGLRVGWLHYGLLAILSLTIVGALKAVGLILAIAMLIAPGAIAYLVTRTFGAMLAVAVMVAVAASFCGV
YLSFFIDSAPAPTIVLLMTAMFLLAFAYSTWKIARAEAQRTSVE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD NP_461785.1 permease Virulence SPI-1 Protein 6e-77 67
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 4e-77 67
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 7e-77 66
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 6e-77 66
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 6e-77 66

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SinmeB_2856 YP_005714996.1 ABC transporter BAC0352 Protein 3e-77 67
SinmeB_2856 YP_005714996.1 ABC transporter BAC0442 Protein 6e-58 57
SinmeB_2856 YP_005714996.1 ABC transporter BAC0441 Protein 7e-37 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SinmeB_2856 YP_005714996.1 ABC transporter VFG0528 Protein 3e-77 67