Gene Information

Name : SinmeB_0125 (SinmeB_0125)
Accession : YP_005712314.1
Strain : Sinorhizobium meliloti BL225C
Genome accession: NC_017322
Putative virulence/resistance : Virulence
Product : extracellular solute-binding protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 140569 - 141366 bp
Length : 798 bp
Strand : +
Note : PFAM: Bacterial extracellular solute-binding, family 1; KEGG: bvi:Bcep1808_3765 hypothetical protein

DNA sequence : 
GTGCGAATTGCAGTTCTGATTGTTCTGACGACTGTCCTTGCCATGCCTGCTTCGGCGCAGGATACCGCACTCCATGACCC
TTCGATCAGCCGCGATGCACAGGACGGGGTGATCCGTCTTTACGGTGCGGGCGGTCCGGACACCGCCATCCGGAAAGTCG
CGGATGTCTGGACGAAGGAGACGGGCCGCAAGGTCGAAATCACCGCCGGACCGGAGAAGACATGGTCGAAAAAGGCGCAG
GGCGATGCGGATGTCATCTGGGGCACGTCCGAACAGGCGATGACCGCTTTTCTCGAAACCTATAAGGGCTTCTCATCGGA
TCAGGTCGAGCCGATATACCTTCGTCCGGCAGTCATTGCGGTGAAAGCGGGCAATCCCAAGGGGATCATGAAATTCGAGG
ACCTTCTGGCGGAAGGGACGAAAATCGTCGTAACCGAAGGAGCCGGCGTCGCCAACACGTCGGGGACGGGTGTGTGGGAG
GATATCGCGGGGCGTCTTGGCCGGCTGGAGGATGTCGCGGCCTTCCGCAGCAACATCGTCGCTTTCGAACAGGGCTCCGG
CGCAAGCTTCAAGGCGTTCAAAGCATTGGATGCAGACGCCTGGATCACCTGGCCGAATTGGCCGCTTTCGAACCCCGACA
CCCTGGAGGCGGTGCCGCTGTCGAGCGATCGCGCAATATGGCGCGACCTCAGCGTGGCCCTGGCCCCCGACGCCGATCCC
GATGCAAAGGCGTTTCTGGATTATCTGATCTCCGATGAGGCGCAGAAGATCATGTCCCGTGAAGGTTGGGTACGCTGA

Protein sequence : 
MRIAVLIVLTTVLAMPASAQDTALHDPSISRDAQDGVIRLYGAGGPDTAIRKVADVWTKETGRKVEITAGPEKTWSKKAQ
GDADVIWGTSEQAMTAFLETYKGFSSDQVEPIYLRPAVIAVKAGNPKGIMKFEDLLAEGTKIVVTEGAGVANTSGTGVWE
DIAGRLGRLEDVAAFRSNIVAFEQGSGASFKAFKALDADAWITWPNWPLSNPDTLEAVPLSSDRAIWRDLSVALAPDADP
DAKAFLDYLISDEAQKIMSREGWVR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
acfC AAK20768.1 accessory colonization factor AcfC Virulence VPI Protein 2e-36 44
acfC AAK20798.1 accessory colonization factor AcfC Virulence VPI Protein 2e-36 44
acfC AAA82706.1 AcfC Virulence VPI Protein 2e-36 44
VC0841 NP_230489.1 accessory colonization factor AcfC Virulence VPI-1 Protein 3e-36 44
acfC YP_001216322.1 accessory colonization factor AcfC Virulence VPI-1 Protein 3e-36 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SinmeB_0125 YP_005712314.1 extracellular solute-binding protein VFG0105 Protein 1e-36 44
SinmeB_0125 YP_005712314.1 extracellular solute-binding protein VFG0839 Protein 3e-35 42