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Name : ipgD (SFxv_4976) Accession : YP_005712025.1 Strain : Genome accession: NC_017319 Putative virulence/resistance : Virulence Product : IpgD Function : - COG functional category : - COG ID : - EC number : - Position : 115025 - 116641 bp Length : 1617 bp Strand : + Note : secreted by the Mxi-Spa machinery, modulates entry of bacteria into epithelial cells DNA sequence : ATGCACATAACTAATTTGGGATTGCATCAGGTTTCATTTCAAAGCGGAGATTCCTATAAAGGCGCAGAAGAAACCGGAAA GCACAAAGGTGTAAGCGTGATTTCATATCAAAGAGTTAAAAATGGAGAAAGAAATAAGGGGATCGAAGCGCTTAATCGAT TATATTTACAGAACCAAACAAGCTTAACAGGAAAAAGCCTTTTGTTTGCGCGTGACAGAGCTGAAGTTTTTTGCGAGGCA ATAAAGTTGGCAGGTGGTGATACGTCAAAAATTAAAGCCATGATGGAACGATTAGATACCTATAAACTTGGTGAAGTTAA TAAAAGACATATTAATGAGCTTAATAAAGTAATAAGTGAAGAGATAAGAGCACAGCTAGGCATTAAAAATAAAAAGGAAT TGCAAACGAAAATAAAACAAATATTTACTGATTATTTAAATAATAAGAATTGGGGACCGGTCGACAAGAATATTAGTCAT CATGGGAAAAATTATGGTTTTCAATTAACTCCTGCCTCTCATATGAAGATAGGGAATAAAAATATATTTGTCAAAGAGTA TAATGGAAAAGGAATTTGTTGTGCTTCTACGAGAGAGAGTGATCATATCGCGAATATGTGGCTTTCAAAAGTGGTGGATG ATGAGGGGAAGGAAATTTTTTCGGGTATCAGACATGGAGTTATATCAGCCTATGGATTGAAAAAAAACTCATCTGAAAGA GCTGTTGCTGCTCGTAATAAAGCTGAGGAGTTAGTAAGCGCAGCATTATATAGCAGACCAGAGTTATTATCACAGGCTTT GTCTGGTAAAACAGTAGATTTAAAGATTGTTTCGACTTCTCTTCTGACGCCGACCAGTTTAACCGGGGGAGAGGAGAGTA TGTTAAAAGATCAGGTGAACGCATTAAAAGGGTTAAACTCTAAAAGGGGGAAGCCAACGAAATTATTAATTCGGAATAGT GATGGTCTTCTGAAAGAAGTAAGCGTTAATCTAAAAGTGGTGACATTTAACTTTGGTGTAAATGAATTAGCGCTAAAAAT GGGCTTAGGCTGGAGGAATGTTGACAAGCTTAATGATGAATCAATATGTTCTTTGTTGGGGGATAATTTCCTCAAAAATG GTGTGATTGGAGGTTGGGCTGCAGAAGCAATAGAAAAAAATCCACCATGTAAGAATGATGTGATATATCTGGCTAACCAG ATAAAAGAGATTGTAACCAAAAAGTTACAAAAAAATGATAATGGAGAGCCGTATAAATTGTCACAAAGAATGACTCTATT GGCTTATACTATAGGTGCTGTACCTTGCTGGAATTGTAAGAGTGGGAAGGACAGAACAGGTATGCAGGATGCTGAAATTA AAAGAGAAATAATAAGAAAACATGAAACAGGTCAGTTTTCTCAATTAAATAGTAAATTATCCTCAGAAGAGAAAAGATTA TTTTCTACTATTCTAATGAATAGTGGTAATATGGAAATCCAAGAGATGAATACTGGTGTGCCCGGAAATAAAGTCATGAA AAAATTGCCGCTATCTTCGTTAGAGCTATCTTATTCTGAAAGAATAGGGGACCCAAAAATATGGAATATGGTGAAAGGGT ATTCGTCATTTGTATAA Protein sequence : MHITNLGLHQVSFQSGDSYKGAEETGKHKGVSVISYQRVKNGERNKGIEALNRLYLQNQTSLTGKSLLFARDRAEVFCEA IKLAGGDTSKIKAMMERLDTYKLGEVNKRHINELNKVISEEIRAQLGIKNKKELQTKIKQIFTDYLNNKNWGPVDKNISH HGKNYGFQLTPASHMKIGNKNIFVKEYNGKGICCASTRESDHIANMWLSKVVDDEGKEIFSGIRHGVISAYGLKKNSSER AVAARNKAEELVSAALYSRPELLSQALSGKTVDLKIVSTSLLTPTSLTGGEESMLKDQVNALKGLNSKRGKPTKLLIRNS DGLLKEVSVNLKVVTFNFGVNELALKMGLGWRNVDKLNDESICSLLGDNFLKNGVIGGWAAEAIEKNPPCKNDVIYLANQ IKEIVTKKLQKNDNGEPYKLSQRMTLLAYTIGAVPCWNCKSGKDRTGMQDAEIKREIIRKHETGQFSQLNSKLSSEEKRL FSTILMNSGNMEIQEMNTGVPGNKVMKKLPLSSLELSYSERIGDPKIWNMVKGYSSFV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| sopB | AAK27357.1 | SopB | Virulence | SPI-5 | Protein | 1e-78 | 46 |
| sopB | AAK27355.1 | SopB | Virulence | SPI-5 | Protein | 3e-72 | 46 |
| sopB | AAK27356.1 | SopB | Virulence | SPI-5 | Protein | 1e-72 | 45 |
| sigD | NP_455588.1 | cell invasion protein | Virulence | SPI-5 | Protein | 7e-75 | 41 |
| sopB | YP_216030.1 | outer protein | Virulence | SPI-5 | Protein | 6e-76 | 41 |
| sopB | NP_460064.1 | secreted effector protein | Virulence | SPI-5 | Protein | 6e-76 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| ipgD | YP_005712025.1 | IpgD | VFG0992 | Protein | 0.0 | 99 |
| ipgD | YP_005712025.1 | IpgD | VFG0465 | Protein | 3e-76 | 41 |
