Gene Information

Name : Deval_3224 (Deval_3224)
Accession : YP_005704003.1
Strain :
Genome accession: NC_017311
Putative virulence/resistance : Virulence
Product : Yop virulence translocation R
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 156168 - 156818 bp
Length : 651 bp
Strand : +
Note : KEGG: lip:LI0537 type III secretion system protein; TIGRFAM: Yop virulence translocation R; PFAM: type III secretion system inner membrane P protein

DNA sequence : 
GTGACAGGCGTAGCCCCACTGTATTTCATCGCGGGCATGGCCCTGCTGGGTCTTGCGCCGTTCTTCCTGATGATGGTCAC
CTCGTACGTGAAGATCGTGGTCGTCACCTCGCTGGTGCGCAACGCCCTCGGGGTGCAGCAGGTGCCGCCCACCATGGTCA
TGAACGGCCTCGCCATCATCCTGAGCATCTTCATCATGGCCCCGGTGGCCTCGGGCACCCTCGACCTCATGCAGAACATG
AAGATCGGCCCCGACCCGGCCCCGCGTGAGATCATCGCCCTGCTGGACAAGGCCTCGCCCCCGCTGCGCGGCTTTCTCGA
ACGCAACGCCGACGACAAGGTCGTAACGGTGTTCATGAGCACCGCCAAGCGCATCTGGCCCGCCGACCAGCACGCCAGCA
TCTCGCGCGACAACCTGCTCATCCTCATTCCGTCGTTCACCATCTCCGAACTGACGCGGGCCTTCCAGATTGGCTTTCTG
CTCTATCTGCCCTTCGTCGCCATCGACCTTGTCATCTCCAACATCCTGCTTGCCATGGGCATGATGATGGTCTCGCCCAT
GACCATATCGCTGCCCTTCAAGCTGCTTCTCTTCGTCACCCTCGACGGCTGGCTCAAGGTCAGTCAGGGGCTGCTTCTCA
GTTACCGCTAG

Protein sequence : 
MTGVAPLYFIAGMALLGLAPFFLMMVTSYVKIVVVTSLVRNALGVQQVPPTMVMNGLAIILSIFIMAPVASGTLDLMQNM
KIGPDPAPREIIALLDKASPPLRGFLERNADDKVVTVFMSTAKRIWPADQHASISRDNLLILIPSFTISELTRAFQIGFL
LYLPFVAIDLVISNILLAMGMMMVSPMTISLPFKLLLFVTLDGWLKVSQGLLLSYR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscR AAO18040.1 LscR Virulence TTSS locus Protein 1e-50 56
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 1e-41 53
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 7e-50 52
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 6e-50 52
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 4e-50 51
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 2e-49 50
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 8e-50 50
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 8e-50 50
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 6e-50 50
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 2e-49 50
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 7e-43 50
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 3e-42 50
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 3e-42 50
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 1e-42 50
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 1e-42 50
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 2e-38 46
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 2e-38 46
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 2e-38 46
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 2e-39 46
unnamed AAL06354.1 EscR Virulence LEE Protein 1e-38 46
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 1e-40 45
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 9e-41 45
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 1e-40 45
escR AAK26700.1 EscR Virulence LEE Protein 9e-41 45
escR AAL57527.1 EscR Virulence LEE Protein 9e-41 45
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 4e-40 45
escR CAC81847.1 EscR protein Virulence LEE II Protein 9e-41 45
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 1e-40 45
escR CAI43889.1 EscR protein Virulence LEE Protein 9e-41 45
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 1e-40 45
escR AAC31528.1 L0049 Virulence LEE Protein 9e-41 45
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 6e-39 45
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 6e-39 45
escR AAC38369.1 EscR Virulence LEE Protein 8e-40 44
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 5e-35 43
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 6e-36 43
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 7e-36 43
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 3e-34 43
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 3e-34 43
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 3e-35 42
hrcR AAB06005.2 HrcR Virulence Hrp PAI Protein 2e-38 41
spaP NP_311752.1 surface presentation of antigens protein SpaP Not tested LIM Protein 3e-36 41
spaP AAS66865.1 SpaP Not tested SSR-2 Protein 1e-37 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Deval_3224 YP_005704003.1 Yop virulence translocation R VFG0188 Protein 5e-54 57
Deval_3224 YP_005704003.1 Yop virulence translocation R VFG0394 Protein 1e-49 56
Deval_3224 YP_005704003.1 Yop virulence translocation R VFG0044 Protein 5e-47 52
Deval_3224 YP_005704003.1 Yop virulence translocation R VFG0519 Protein 3e-43 50
Deval_3224 YP_005704003.1 Yop virulence translocation R VFG0827 Protein 4e-41 45
Deval_3224 YP_005704003.1 Yop virulence translocation R VFG0715 Protein 4e-40 44
Deval_3224 YP_005704003.1 Yop virulence translocation R VFG2338 Protein 3e-31 42
Deval_3224 YP_005704003.1 Yop virulence translocation R VFG1259 Protein 7e-33 42
Deval_3224 YP_005704003.1 Yop virulence translocation R VFG1012 Protein 8e-34 41
Deval_3224 YP_005704003.1 Yop virulence translocation R VFG2016 Protein 3e-30 41