Gene Information

Name : Deval_3220 (Deval_3220)
Accession : YP_005703999.1
Strain :
Genome accession: NC_017311
Putative virulence/resistance : Virulence
Product : type III secretion apparatus H+-transporting two-sector ATPase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 152196 - 153512 bp
Length : 1317 bp
Strand : +
Note : TIGRFAM: type III secretion apparatus H+-transporting two-sector ATPase; ATPase, FliI/YscN family; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; KEGG: lip:LI05

DNA sequence : 
ATGGCCTTCGAATACATAGGCCCGCTGCTTGAAGAGGCCGTCAACAGCGGCCCCTCGGTCGAGGTGCGCGGTCGCGTCGA
ACAGGTGGTGGGAACCATCATCCGCGCCGTGGTGCCCGGGGTGAAGGTCGGCGAACTGTGCCTGCTGCGCAACCCGTGGG
ACGACTGGAACCTGCGGGCAGAGGTGGTGGGTTTCGTCAAGCATGTGGCGTTGCTCACGCCGCTGGGCAATCTTCAGGGC
ATCTCGCCCGCCACGGAGGTCATCCCCACTGGCGAGATTCTCTCCATCCCCGTCGGTGAAGACCTCTTGGGGCGCGTCCT
CGACGGCCTTGGCGACCCCATCGACGGCGGCCCGCCGCTGAAGCCGCGCACCCGCTACCCCGTCTACGCCGACCCGCCCA
ACCCCATGACGCGCCGCATCATCGACAGGCCCATCTCGCTGGGGCTGCGTGTCCTCGACGGGGTGCTCACCTGCGGCGAA
GGCCAGCGCATGGGCATCTTCGCGGCTGCGGGCGGCGGCAAGAGCACCCTACTCTCGAGCATCATCAAGGGATGCTCTGC
GGATGTGTGCGTGCTCGCGCTCATCGGTGAACGCGGGCGAGAGGTGCGCGAGTTCATCGAACACGACCTCGGCCCCGAAG
GACGCAAGAAGGCGGTGCTGGTGGTATCCACCTCTGACCGTTCGTCCATGGAACGGCTGAAGGCCGCCTACACGGCGACC
GCCATCGCCGAATATTTCCGCGACCAGCGGCGCAGCGTGCTGCTGATGATGGACTCGGTGACGCGCTTCGGACGCGCCCA
GCGCGAGATAGGGCTGGCAGCGGGCGAACCGCCCACGCGCCGGGGCTTTCCGCCGTCGGTCTTCTCGACCCTGCCGCGCC
TCATGGAACGTGCGGGCAACTCCGACAGGGGTTCCATCACCGCGCTGTACACCGTGCTGGTGGAAGGCGACGACATGACA
GAACCCATCGCCGACGAGACGCGCTCCATCCTCGACGGGCACATCGTCCTCTCGCGCAAGCTGGCGGCAGCCAACCACTA
CCCCGCCATCGACGTGCAGGCCAGCGTCAGCCGCGTCATGAACGCCATCGTCGGCAAGGAGCACAAGGGCGCGGCGCAGA
AGCTGCGCAAGATTCTCGCCAAATACGCCGAGGTGGAACTGCTGGTGCAGATTGGCGAATACAAGAAGGGTTCCGACAAG
GAGGCCGACGACGCGCTGGCGCGTGTGGGCGCGGTGAACGCCTTCCTGCGGCAGGGTCTCGACGAGCGAAGCACCTTCGA
CGAGACGCTGGCGGCCCTGTACAAGGCCACGGAGTAA

Protein sequence : 
MAFEYIGPLLEEAVNSGPSVEVRGRVEQVVGTIIRAVVPGVKVGELCLLRNPWDDWNLRAEVVGFVKHVALLTPLGNLQG
ISPATEVIPTGEILSIPVGEDLLGRVLDGLGDPIDGGPPLKPRTRYPVYADPPNPMTRRIIDRPISLGLRVLDGVLTCGE
GQRMGIFAAAGGGKSTLLSSIIKGCSADVCVLALIGERGREVREFIEHDLGPEGRKKAVLVVSTSDRSSMERLKAAYTAT
AIAEYFRDQRRSVLLMMDSVTRFGRAQREIGLAAGEPPTRRGFPPSVFSTLPRLMERAGNSDRGSITALYTVLVEGDDMT
EPIADETRSILDGHIVLSRKLAAANHYPAIDVQASVSRVMNAIVGKEHKGAAQKLRKILAKYAEVELLVQIGEYKKGSDK
EADDALARVGAVNAFLRQGLDERSTFDETLAALYKATE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscN AAO18044.1 LscN Virulence TTSS locus Protein 1e-122 70
hrcN AAP34339.1 HrcN Virulence Hrp PAI Protein 1e-99 59
hrcN NP_640767.1 type III secretion system ATPase Virulence Hrp PAI Protein 5e-99 59
hrpB6 BAB07852.1 HrpB6 Virulence Hrp PAI Protein 8e-100 59
hrcN YP_198730.1 type III secretion system ATPase Virulence Hrp PAI Protein 1e-99 59
hrpB6 AAF61281.1 HrpB6 Virulence Hrp PAI Protein 8e-100 59
hrpB6 AAB08461.1 HrpB6 Virulence Hrp PAI Protein 4e-99 59
hrcN YP_362163.1 type III secretion system ATPase Virulence Hrp PAI Protein 6e-99 59
XC_3006 YP_244074.1 type III secretion system ATPase Virulence Hrp PAI Protein 4e-96 59
hrcN NP_636610.1 type III secretion system ATPase Virulence Hrp PAI Protein 4e-96 59
YPO0267 YP_002345348.1 type III secretion system ATPase Virulence Not named Protein 3e-90 59
ssaN YP_216423.1 type III secretion system ATPase Virulence SPI-2 Protein 6e-79 52
hrcN AAG33879.1 HrcN Virulence Hrp PAI Protein 1e-78 51
hrcN NP_791227.1 type III secretion cytoplasmic ATPase HrcN Virulence Hrp PAI Protein 2e-78 51
hrcN AAT96141.1 HrcN Virulence T-PAI Protein 3e-79 51
hrcN AAT96195.1 HrcN Virulence T-PAI Protein 3e-79 51
hrcN AAR25633.1 type III secretion cytoplasmic ATPase HrcN Not tested Not named Protein 5e-72 50
hrcN ABQ88354.1 HrcN Virulence Hrp PAI Protein 6e-74 50
hrpJ4 AAA81942.1 HrpJ4 Virulence Hrp PAI Protein 6e-74 50
hrcN AAT96339.1 HrcN Virulence S-PAI Protein 2e-79 49
hrcN AAT96258.1 HrcN Virulence S-PAI Protein 6e-79 48
hrcN AAT96299.1 HrcN Virulence S-PAI Protein 3e-79 48
hrcN AAB06001.1 HrcN Virulence Hrp PAI Protein 6e-81 48
invC AAS66861.1 InvC Not tested SSR-2 Protein 2e-73 47
hrcN ABA47275.1 HrcN Virulence S-PAI Protein 1e-84 47
spaI NP_806497.1 ATP synthase SpaL Virulence SPI-1 Protein 6e-73 45
invC NP_461815.1 ATP synthase SpaL Virulence SPI-1 Protein 6e-73 45
invC YP_217813.1 ATP synthase SpaL Virulence SPI-1 Protein 6e-73 45
spaI NP_457288.1 secretory apparatus ATP synthase (associated with virulence) Virulence SPI-1 Protein 6e-73 45
ECs3730 NP_311757.1 ATP synthase SpaL Not tested LIM Protein 4e-72 45
ysaN AAS66842.1 YsaN Not tested SSR-1 Protein 9e-72 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Deval_3220 YP_005703999.1 type III secretion apparatus H+-transporting two-sector ATPase VFG0390 Protein 8e-127 72
Deval_3220 YP_005703999.1 type III secretion apparatus H+-transporting two-sector ATPase VFG0192 Protein 9e-124 70
Deval_3220 YP_005703999.1 type III secretion apparatus H+-transporting two-sector ATPase VFG0048 Protein 2e-128 67
Deval_3220 YP_005703999.1 type III secretion apparatus H+-transporting two-sector ATPase VFG2144 Protein 2e-99 53
Deval_3220 YP_005703999.1 type III secretion apparatus H+-transporting two-sector ATPase VFG1254 Protein 3e-78 50
Deval_3220 YP_005703999.1 type III secretion apparatus H+-transporting two-sector ATPase VFG2331 Protein 8e-71 50
Deval_3220 YP_005703999.1 type III secretion apparatus H+-transporting two-sector ATPase VFG2459 Protein 3e-81 48
Deval_3220 YP_005703999.1 type III secretion apparatus H+-transporting two-sector ATPase VFG0555 Protein 3e-73 45
Deval_3220 YP_005703999.1 type III secretion apparatus H+-transporting two-sector ATPase VFG1008 Protein 1e-71 44
Deval_3220 YP_005703999.1 type III secretion apparatus H+-transporting two-sector ATPase VFG1778 Protein 3e-76 44