Gene Information

Name : Deval_0496 (Deval_0496)
Accession : YP_005701303.1
Strain : Desulfovibrio vulgaris RCH1
Genome accession: NC_017310
Putative virulence/resistance : Virulence
Product : two component Fis family sigma54-specific transcriptional regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 614614 - 616017 bp
Length : 1404 bp
Strand : -
Note : KEGG: drt:Dret_0970 two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase

DNA sequence : 
ATGCCAACGACATGTGACGAACACATCCTCATCGTCGATGACGAACCCGACTTCGCGCACGGACTGGCAAGACTGGTGAG
CAGGGACTTTCCGGCAGCCAGTGTCTCTGTGGCGCTTTCCGGCGCTGAGGCGCTGCACATCATCCAGGGCAGCGGGGTCG
CCCTGCTGCTCACCGACCTGCGGATGCCCGACATGGATGGAATGGAACTCATGCAGCAGGCCATGACCGTGGACCCCACG
ACTTCGGTCATCCTGCTCACGGCGCACGGTTCCATAGAGACGGCGGTCGCCGCCCTCAAGAACGGCGCATACGACTTCCT
CACCAAGCCCGTCCGCCGCGAAGAACTGCAAAGGACCCTCAACAAGGCGCTGGAGCGGATACGCATCCTCAAAGAGAACA
AACGGTTGCGTCAAATGATGCAACAAGGCTGCATCGAACGCCAGATGATAGGCGAATCTCCGGTCATGCAACGCCTCAAG
GAGACTATCGCGGCCATCGCAGCCACGGACTACTCTGTGCTCATCAGGGGAGAATCAGGGACAGGCAAGGAACTCGTCGC
CGACATGCTGCACCGCCTCGGCAGCAGGAGGGAGCGCCCACTAGTCAAAGTGAACTGCCCCTCCATCCCCGACCAGCTTC
TGGAAAGTGAACTGTTCGGACACGTCAAAGGGGCATTCACGGGGGCAGACAGGACTCGGCGCGGGCTCTTCATGTCTGCG
CAACGGGGAACGCTCCTGCTGGATGAAATCGGGGACATCGGTGAGGCACTCCAGACCAAGCTGCTCCGGGTCTTGCAAGA
GCGCGAGATTCGCCCTGTGGGGTCAAGCGCGAGCACCCTCGTGGATGTGCGTATCATCGCCAGCACCAACAGGGCCCTCG
AAGAGCGCATCAAGCAGGGACTCTTCCGGGAAGACCTCTTCTACAGGCTCAACGTGCTGACCATCCACACGCCCCCCCTC
CGAGAACGGCGCGACGACATCCCACTGCTGGCAGACCACTTCGTCGCGGCGACTTGCCGGGAGCTCTCCAGCCCTGTGAA
ACGCATCTCACCCGGCGCACTTGCCTGTCTTGCCGGAAGGGAGTGGCCCGGCAATGTCAGGGAACTACAGAACTACATCC
GCAGGCTCGTCGTCTTCTGCCCGGGAGACACCATCGACACCGCCCACCTTCGTCTTGTGGACGGCACGACCTGCCCGACG
ACTGCGGAGACGCCATCCCTTGTTCCCTACAAAGAGGCGAAGGGGGCTGTCGTGGAGGATTTCACCCGCCGTTACGTCGA
AGGCCTCTTGCGCCAGACGGGAGGCAACATATCCGAGGCGGCGCGACTTTCAGGCATCGAACGCGTGTCACTCCAGAAGA
TCCTGCGTCGTCTGGGCACTTCCGGAGACACGTTCAAAGGATAG

Protein sequence : 
MPTTCDEHILIVDDEPDFAHGLARLVSRDFPAASVSVALSGAEALHIIQGSGVALLLTDLRMPDMDGMELMQQAMTVDPT
TSVILLTAHGSIETAVAALKNGAYDFLTKPVRREELQRTLNKALERIRILKENKRLRQMMQQGCIERQMIGESPVMQRLK
ETIAAIAATDYSVLIRGESGTGKELVADMLHRLGSRRERPLVKVNCPSIPDQLLESELFGHVKGAFTGADRTRRGLFMSA
QRGTLLLDEIGDIGEALQTKLLRVLQEREIRPVGSSASTLVDVRIIASTNRALEERIKQGLFREDLFYRLNVLTIHTPPL
RERRDDIPLLADHFVAATCRELSSPVKRISPGALACLAGREWPGNVRELQNYIRRLVVFCPGDTIDTAHLRLVDGTTCPT
TAETPSLVPYKEAKGAVVEDFTRRYVEGLLRQTGGNISEAARLSGIERVSLQKILRRLGTSGDTFKG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 1e-69 43
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 1e-69 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Deval_0496 YP_005701303.1 two component Fis family sigma54-specific transcriptional regulator BAC0467 Protein 3e-78 43
Deval_0496 YP_005701303.1 two component Fis family sigma54-specific transcriptional regulator BAC0089 Protein 8e-86 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Deval_0496 YP_005701303.1 two component Fis family sigma54-specific transcriptional regulator VFG1214 Protein 4e-67 42