Gene Information

Name : Deval_0289 (Deval_0289)
Accession : YP_005701098.1
Strain : Desulfovibrio vulgaris RCH1
Genome accession: NC_017310
Putative virulence/resistance : Virulence
Product : NAD-dependent epimerase/dehydratase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 367051 - 368076 bp
Length : 1026 bp
Strand : -
Note : PFAM: NAD-dependent epimerase/dehydratase; KEGG: dds:Ddes_0109 NAD-dependent epimerase/dehydratase

DNA sequence : 
ATGAGCACGTTCGACTCCGTCCTGCAGGACATCAACGCCAGCCCGCGCACATGGCTTGTCACGGGCGTAGCCGGGTTCAT
CGGCTCCAACCTGCTGGAGACCCTGCTCAGGCAGGGACAGCGCGTGGTGGGCCTCGACAATTTCCTCACCGGCTACCAGC
GCAACCTCGACATGGTGCGCGACCTCGTGGGCGAAGAGCGTTGGGCGTCGTTCCGCTTCATCGAGGGCGACATCCGCGAC
CTCGCCACCTGCCACGAAGCCTGCAAGGGCGTCGACCATGTGCTGCATCAGGCGGCCCTCGGGTCGGTACCGCGCTCCAT
CGACGACCCCATCCTCTCCAACGAGTGCAACATCACCGGTTTCGTCAACATGCTGGTGGCCGCCCGTGATGCCGGCGCCA
AGAGCTTCGTCTACGCGGCGTCCAGTTCCACCTACGGTGACGAACCGACGCTGCCCAAGGTCGAGGACATCATCGGCAAG
CCGCTTTCGCCCTACGCCGTCACCAAGTACGTCAACGAACTCTACGCCGACGTGTTCGCGCGCTGCTACGGCTTCACCGC
CATCGGGCTGCGCTACTTCAACGTCTTCGGGCAGCGCCAGGACCCCTTCGGTGCCTACGCAGCCGTCATCCCCCAGTGGT
TCGCCAGCCTGCTGCGCGGCGAGACCGTGTTCGTGAACGGCGACGGCGAGACCAGCCGCGACTTCTGCTACATCGACAAC
GTGGTGCAGGCCAACATCCTCGCTTCGCTGGCCCCTGCCGAAGCACGCGACAAGGTGTACAACGTGGCCTTCGGCCAGCG
CACCACACTGAACGAACTCTTCGACCTCATTCGCGAAGAGGTGGTGCGTCACAAGCCCGAAGCCGCCGGGGCCACCTGCG
TGCATCGCGACTTCCGCGCGGGAGACGTGCGTCACTCGCTGGCCGACATCACCCGCGCACAGACGCTTCTGGGCTACGCC
CCGGTGTACGACGTGCGCGAGGGGCTGCGACTGGCTGGCGACTGGTACGCCGCCAACCTGAAGTAG

Protein sequence : 
MSTFDSVLQDINASPRTWLVTGVAGFIGSNLLETLLRQGQRVVGLDNFLTGYQRNLDMVRDLVGEERWASFRFIEGDIRD
LATCHEACKGVDHVLHQAALGSVPRSIDDPILSNECNITGFVNMLVAARDAGAKSFVYAASSSTYGDEPTLPKVEDIIGK
PLSPYAVTKYVNELYADVFARCYGFTAIGLRYFNVFGQRQDPFGAYAAVIPQWFASLLRGETVFVNGDGETSRDFCYIDN
VVQANILASLAPAEARDKVYNVAFGQRTTLNELFDLIREEVVRHKPEAAGATCVHRDFRAGDVRHSLADITRAQTLLGYA
PVYDVREGLRLAGDWYAANLK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tviC NP_458739.1 Vi polysaccharide biosynthesis protein, epimerase Virulence SPI-7 Protein 1e-102 61
tviC NP_807944.1 VI polysaccharide biosynthesis epimerase Virulence SPI-7 Protein 1e-102 61

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Deval_0289 YP_005701098.1 NAD-dependent epimerase/dehydratase VFG0430 Protein 5e-103 61