Gene Information

Name : Deval_0022 (Deval_0022)
Accession : YP_005700831.1
Strain : Desulfovibrio vulgaris RCH1
Genome accession: NC_017310
Putative virulence/resistance : Virulence
Product : two component Fis family sigma54-specific transcriptional regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 25444 - 26823 bp
Length : 1380 bp
Strand : -
Note : KEGG: dde:Dde_0109 two component Fis family transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase

DNA sequence : 
ATGAGCGACGTGACCGTTCTCATCGTGGATGACGATGTGGCTCACCGCACCATGCTGCGTACCATGCTGCGCGGCTGGGG
CTATGCCACTGACGAGGCCGACGACGGCGAGACCGCCGTCGAGAAGGTGCGCGAAAAGGCCCGCGATGCGGTGCTCATGG
ATGTGCGCATGGCCCGCATGGGCGGTATCGAGGCGTTGCGGCGCATCGTGGAGTACAACCCCGCCGTGCCCGTTCTCATC
ATGACGGCATACTCCTCTGTGGAGACGGCCGTGGAGGCTCTGCGGCTCGGGGCCTACGACTACCTGACCAAGCCGCTGGA
CTTCGATGTGCTGCGCCATACCCTCGAGCGCGCCCTCGACCATACCCGCCTCGTGTCCGAGAACCGTGAGCTGAAGAGCC
GCCTCGACGACGCGGCACGGGCACCGGGCATCATCGGGCGCAGTGCACCCATGCGTGAGCTGGCCGAACTCGTCGCCACC
GTCGCGCCGTCCGAGGCCACGGTGCTCATCACCGGAGAGTCGGGAACAGGCAAGGAACTGGTGGCAAGGTCGCTTCACGA
GGGCAGCCGTCGCAGCGCAAAGCAACTGGTGACGGTGAACTGCGCAGCACTCTCCGAGTCGCTCCTCGAGTCGGAGTTGT
TCGGGCATGAGCGGGGAGCCTTCACCGGGGCCGACAAGCGCCGTGACGGGCGATTCGTGCAGGCCGACGGAGGTACACTC
TTCCTCGACGAGATAGGCGAACTGCCGCTGCTGTTGCAGGCCAAACTGCTGCGGGCGCTGCAACAGGGAGAGATACAGCG
CGTGGGCAGCGACGTTCCGCTGACGGTGGACGTGCGGCTTCTTGCCGCCACCAACCGCGACCTGCGCGAAGAGGTGGCCG
CCGGGCGCTTTCGCGAAGACCTGTTCTATCGCCTCAATGTCATCGGCATCCATATGCCCGCGCTGCGTGAACGGCCCGAT
GACATCCCCCTGCTGGCGGCGCATTTCCTCGACCGTTACGCGGAACGCAACCGCAAGCACCTCAAGGGTTTCACCCCGCA
GGCCATGGACATGCTGCTCAAGCACCCGTGGCCGGGTAACGTGCGTGAACTCGAGAACGCCGTGGAGAGGGCTGTCATCA
TGGCCACGGGTGACTGGGTCGGCGAACGTGAACTGCCCATGTCCCTGCGCGGGGCGGGGGGCGCCGACCCAGCCGTCGCC
GATGCCGCACTGCCCACCGGTCAGGACCCCTACGCCGGTCTCTCACTGGAAGACCTCGAGCGTCGCGCCATCGTCGCCAC
CCTGCGCGAGACGGGTGACAACAAGAGTGAAGCCGCAAGGCGTCTCGGCATCACCCGTGCCACACTGCACAACAAACTCA
AGAAGTACGACCTCGAATGA

Protein sequence : 
MSDVTVLIVDDDVAHRTMLRTMLRGWGYATDEADDGETAVEKVREKARDAVLMDVRMARMGGIEALRRIVEYNPAVPVLI
MTAYSSVETAVEALRLGAYDYLTKPLDFDVLRHTLERALDHTRLVSENRELKSRLDDAARAPGIIGRSAPMRELAELVAT
VAPSEATVLITGESGTGKELVARSLHEGSRRSAKQLVTVNCAALSESLLESELFGHERGAFTGADKRRDGRFVQADGGTL
FLDEIGELPLLLQAKLLRALQQGEIQRVGSDVPLTVDVRLLAATNRDLREEVAAGRFREDLFYRLNVIGIHMPALRERPD
DIPLLAAHFLDRYAERNRKHLKGFTPQAMDMLLKHPWPGNVRELENAVERAVIMATGDWVGERELPMSLRGAGGADPAVA
DAALPTGQDPYAGLSLEDLERRAIVATLRETGDNKSEAARRLGITRATLHNKLKKYDLE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
norR ABD94719.1 putative nitric oxide reductase transcriptional regulator Not tested ExoU island B Protein 2e-43 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Deval_0022 YP_005700831.1 two component Fis family sigma54-specific transcriptional regulator BAC0467 Protein 5e-117 60
Deval_0022 YP_005700831.1 two component Fis family sigma54-specific transcriptional regulator BAC0089 Protein 5e-81 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Deval_0022 YP_005700831.1 two component Fis family sigma54-specific transcriptional regulator VFG0116 Protein 4e-56 43
Deval_0022 YP_005700831.1 two component Fis family sigma54-specific transcriptional regulator VFG1249 Protein 3e-57 43
Deval_0022 YP_005700831.1 two component Fis family sigma54-specific transcriptional regulator VFG1214 Protein 7e-60 41