Gene Information

Name : ETAF_2789 (ETAF_2789)
Accession : YP_005700383.1
Strain : Edwardsiella tarda FL6-60
Genome accession: NC_017309
Putative virulence/resistance : Unknown
Product : Integrase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3189533 - 3190783 bp
Length : 1251 bp
Strand : -
Note : -

DNA sequence :
ATGGCTCTCACCGATATCAAAGTTAGGACTACCAAGCCCTCCGACAAACCCTTCAAACTCACCGATGGGCAGGGTATGCA
CCTGCTGATCAACCCCAATGGTTCAAAATACTGGCGACTCCAATACCGTTTCGGGGGCAAACAGAAAGTTTTAGCATTGG
GGGTTTATCCAATGGTCTCTCTTGGTGAAGCCCGCAGGAAGCGAGATGAAGCCAAAAAGTTGGTATTTGATGGTATCGAC
CCTTCTGAGAAGAAAAAAGCAGATAAGATCGAGCAAAGCGAAGCTCTGACATTCGAGGCTGTCGCAAGGGACTGGCATAC
TGCCTGTAAAAGGAAATGGTCTGATTCCCACAGCGAGAGAGTTCTAAAAAGCATGGAAGATGGTCTCTTTACTGCTATTG
GTAAAAGAAAAATATCCGAACTTAATACCAGAGATCTTCTTGCCCCTATCAAGGCTGTTGAAGCTTCCGGGCGATTGGAA
GTTGCTTCCCGATTACAGCAAAGAACAACGGCAGTAATGAGATATGCTGTCCAGAACGGGCTGATAGATTACAACCCTGC
TCAGGAGATGGCAGGAGCTATTGCGGTAGCTAAAAGAGTCCACAGGCCAGCTTTGCCATTCGAACGATTCTCAGAACTTT
TAGAACGAATTGATAGTTTCAAGGGTAGAAAACTCACGAAGTTAGCCGTAAAGCTGACATTGCTCATTTTCATTCGTTCC
AGTGAACTCAGGTTTGCTCGTTGGTCAGAGATAGATTTCGACAATGCCATGTGGACTATTCCTGCAGAGCGAGAGCCATT
ACCTGGAGTGAAGCATTCGCACCGTGGTTCGAAAATGCGAACTCCACACCTTGTTCCTTTGAGTTGTCAGGCATTGGCTG
TGTTGACGGAAATTAAAGAGATCAGCGGTGATCATGAACTCGTGTTCATTGGCGACCATGATTTCAGAAAGCCTATGAGT
GAAAATACGGTAAACAAGGCTTTGAGGTCTATGGGCTATGACACAACTGTGGAGGTCTGTGGACATGGATTCAGGGCTAT
GGCTTGTAGTGCCTTGATTGAATCCGGTTTGTGGTCGAAAGATGCTGTTGAACGGCAAATGAGCCATCAGGAGCGGAACT
CAGTTCGTGCTGCCTATATACATAAAGCAGAGCACCTTGATGAGCGAAAGTTAATGCTTCAATGGTGGGCCGATTACCTT
GACCTTCTTAGAATACGACAAGTTTCACCATTTGATTTTAAAAAGACTTAA

Protein sequence :
MALTDIKVRTTKPSDKPFKLTDGQGMHLLINPNGSKYWRLQYRFGGKQKVLALGVYPMVSLGEARRKRDEAKKLVFDGID
PSEKKKADKIEQSEALTFEAVARDWHTACKRKWSDSHSERVLKSMEDGLFTAIGKRKISELNTRDLLAPIKAVEASGRLE
VASRLQQRTTAVMRYAVQNGLIDYNPAQEMAGAIAVAKRVHRPALPFERFSELLERIDSFKGRKLTKLAVKLTLLIFIRS
SELRFARWSEIDFDNAMWTIPAEREPLPGVKHSHRGSKMRTPHLVPLSCQALAVLTEIKEISGDHELVFIGDHDFRKPMS
ENTVNKALRSMGYDTTVEVCGHGFRAMACSALIESGLWSKDAVERQMSHQERNSVRAAYIHKAEHLDERKLMLQWWADYL
DLLRIRQVSPFDFKKT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
intB CAD42017.1 bacteriophage P4 integrase Not tested PAI II 536 Protein 7e-141 73
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 5e-136 69
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 2e-138 69
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 2e-138 69
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 2e-137 69
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 6e-138 69
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 8e-138 69
int AAL51028.1 CP4-like integrase Not tested LEE Protein 6e-138 69
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 8e-138 69
int-phe AAL60261.1 Int-phe Not tested LEE Protein 6e-138 69
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 3e-138 69
int AAK16198.1 Int Not tested PAI-I AL862 Protein 2e-138 69
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 2e-138 69
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 1e-138 69
int AAL51003.1 CP4-like integrase Not tested LEE Protein 2e-137 69
int CAC81896.1 integrase Not tested LEE II Protein 3e-128 69
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 4e-138 68
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 4e-138 68
int AAK00456.1 Int Not tested SHI-1 Protein 2e-128 68
Z4313 NP_289539.1 pathogenicity island integrase Not tested OI-122 Protein 3e-137 68
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 4e-135 68
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 2e-136 68
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 4e-124 63
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 4e-124 63
STY4821 NP_458899.1 integrase Not tested SPI-10 Protein 2e-115 57
APECO1_1051 YP_853069.1 phage integrase Not tested PAI IV APEC-O1 Protein 7e-76 57
int CAB59974.1 integrase Not tested HPI Protein 4e-107 56
intB AAD37509.1 P4-like integrase Not tested PAI IV 536 Protein 3e-88 56
int2 NP_993013.1 integrase Not tested HPI Protein 5e-106 55
int CAA08754.1 integrase Not tested HPI Protein 1e-106 55
int CAA21384.1 - Not tested HPI Protein 5e-106 55
int YP_002346908.1 integrase Not tested HPI Protein 5e-106 55
y2393 NP_669700.1 prophage integrase Not tested HPI Protein 5e-106 55
unnamed AAD17660.1 unknown Not tested HPI Protein 3e-103 54
int NP_458759.1 bacteriophage integrase Not tested SPI-7 Protein 1e-109 52
int NP_807963.1 bacteriophage integrase Not tested SPI-7 Protein 1e-109 52
unnamed ABR13507.1 phage integrase Not tested PAGI-6 Protein 2e-97 50
int AAD44730.1 Int Not tested SHI-2 Protein 3e-82 45
int CAC39282.1 integrase Not tested LPA Protein 6e-83 45
aec33 AAW51716.1 Int Not tested AGI-3 Protein 6e-83 45
int AAC31482.1 CP4-like integrase Not tested LEE Protein 1e-80 44
int ACU09430.1 integrase Not tested LEE Protein 1e-80 44
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 1e-80 44
ECs4534 NP_312561.1 integrase Not tested LEE Protein 1e-80 44
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 1e-80 44
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 1e-80 44
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 1e-80 44
ESA_03025 YP_001439090.1 hypothetical protein Not tested Not named Protein 3e-70 41
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 1e-70 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ETAF_2789 YP_005700383.1 Integrase VFG1536 Protein 4e-141 73
ETAF_2789 YP_005700383.1 Integrase VFG0626 Protein 2e-138 68
ETAF_2789 YP_005700383.1 Integrase VFG1693 Protein 8e-137 68
ETAF_2789 YP_005700383.1 Integrase VFG0783 Protein 6e-81 44
ETAF_2789 YP_005700383.1 Integrase VFG0598 Protein 5e-81 44