Gene Information

Name : ypjF (ETAF_2492)
Accession : YP_005700086.1
Strain : Edwardsiella tarda FL6-60
Genome accession: NC_017309
Putative virulence/resistance : Virulence
Product : YpjF toxin protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2833158 - 2833487 bp
Length : 330 bp
Strand : +
Note : -

DNA sequence :
ATGCAAACCTTATCATCACACCCGACACGGTCGACTCAGCCCTATCTGTCACCCGTTGAAACCTGGCAACGGCTGCTGAC
TCATCTATTCTCGCAGCACTATGGCCTGACGCTGAATGACACACCGTTCAGTAATGAAACCACCATACGAGAACATATTG
ATGCTGGAGTATCGCTCAGCGATGCGGTGAACTTTCTTGTCGAAAAATACGAGCTTATCCGTATCGATCGGAAGGGATTT
TCGTGGCAACAACAGACTCCGTATATTTCCGTAGTGGATATTCTACGAGCAAGACGCAATACCGGCTTGCTAAAAACTAA
TGTGAAATAA

Protein sequence :
MQTLSSHPTRSTQPYLSPVETWQRLLTHLFSQHYGLTLNDTPFSNETTIREHIDAGVSLSDAVNFLVEKYELIRIDRKGF
SWQQQTPYISVVDILRARRNTGLLKTNVK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD66207.1 hypothetical protein Not tested PAI III 536 Protein 5e-28 58
yeeV YP_854325.1 hypothetical protein Not tested PAI I APEC-O1 Protein 6e-27 58
ECO103_3592 YP_003223449.1 hypothetical protein Not tested LEE Protein 1e-26 58
unnamed CAD42101.1 hypothetical protein Not tested PAI II 536 Protein 9e-27 58
unnamed AAL67342.1 intergenic-region protein Not tested PAI II CFT073 Protein 7e-27 58
z5091 CAD33789.1 Z5091 protein Not tested PAI I 536 Protein 7e-27 57
unnamed AAL08478.1 unknown Not tested SRL Protein 7e-26 57
unnamed AAL57575.1 unknown Not tested LEE Protein 5e-27 57
yeeV CAE85204.1 YeeV protein Not tested PAI V 536 Protein 9e-27 57
unnamed CAI43848.1 hypothetical protein Not tested LEE Protein 5e-27 56
aec76 AAW51759.1 Aec76 Not tested AGI-3 Protein 5e-27 56
yeeV NP_838487.1 hypothetical protein Not tested SHI-1 Protein 8e-27 56
yeeV NP_708773.1 hypothetical protein Not tested SHI-1 Protein 8e-27 56
unnamed AAK00482.1 unknown Not tested SHI-1 Protein 6e-27 56
unnamed ACU09433.1 conserved hypothetical protein Not tested LEE Protein 6e-26 55
ECs4539 NP_312566.1 hypothetical protein Not tested LEE Protein 9e-26 55
unnamed AAC31486.1 L0007 Not tested LEE Protein 6e-26 55
Z5091 NP_290242.1 hypothetical protein Not tested LEE Protein 9e-26 55
yeeV ADD91699.1 YeeV Not tested PAI-I AL862 Protein 4e-26 55
c5149 NP_756997.1 hypothetical protein Not tested PAI II CFT073 Protein 3e-26 55
unnamed AAL67389.1 L0007-like protein Not tested PAI II CFT073 Protein 2e-26 55

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ypjF YP_005700086.1 YpjF toxin protein VFG1682 Protein 2e-28 58
ypjF YP_005700086.1 YpjF toxin protein VFG1620 Protein 4e-27 58
ypjF YP_005700086.1 YpjF toxin protein VFG1530 Protein 3e-27 57
ypjF YP_005700086.1 YpjF toxin protein VFG1069 Protein 3e-26 57
ypjF YP_005700086.1 YpjF toxin protein VFG0663 Protein 2e-27 56
ypjF YP_005700086.1 YpjF toxin protein VFG0786 Protein 3e-26 55