Gene Information

Name : ETAF_2489 (ETAF_2489)
Accession : YP_005700083.1
Strain : Edwardsiella tarda FL6-60
Genome accession: NC_017309
Putative virulence/resistance : Virulence
Product : DNA repair protein RadC family protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2832026 - 2832511 bp
Length : 486 bp
Strand : +
Note : -

DNA sequence : 
ATGGCTCAACATGATTACCTGCTTACCGCGACATCCGGATTAACACCCTATGCCCAACGCACCATTCGCCGCGCTATCAA
TCTGCTGGATAAATATCTGCGCCAGCCCGGTATATCCTTTACCTCAAGTACTGCTGCCCGTGACTGGCTTCAGTTACAGC
TGGCAGGGCAAGAACGGGAAGTGTTTATGGTGCTCTATCTCGATAACCTGCACTGTTTACTGGAGAGCGAAACGCTGTTT
GCCGGTTCGGTTAACCATGTACAGGTCCATCCTCGTGAGGTGGTGAAGTCAGCGCTTCGCTTCAATGCTGCTGCTGTCGT
GCTGGCACATAACCATCCGTCCGGCGATCCAGAGCCCAGCAAAGCCGATCGCCAGTTGACTGACAGGATAAAAGAGGTTC
TGGGACTGGTTGATGTGAAAACGCTCGATCATCTGGTTGTCGGCCAGGATGGGATTGTGTCGTTTGCAGAACGAGGCTGG
ATATGA

Protein sequence : 
MAQHDYLLTATSGLTPYAQRTIRRAINLLDKYLRQPGISFTSSTAARDWLQLQLAGQEREVFMVLYLDNLHCLLESETLF
AGSVNHVQVHPREVVKSALRFNAAAVVLAHNHPSGDPEPSKADRQLTDRIKEVLGLVDVKTLDHLVVGQDGIVSFAERGW
I

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAK00479.1 unknown Not tested SHI-1 Protein 7e-35 59
unnamed CAD42098.1 hypothetical protein Not tested PAI II 536 Protein 2e-36 55
yeeS AAZ04458.1 putative RadC-like protein Not tested PAI I APEC-O1 Protein 8e-37 55
Z1217 NP_286752.1 RadC family DNA repair protein Not tested TAI Protein 4e-36 55
yeeS YP_854323.1 radC-like protein YeeS Not tested PAI I APEC-O1 Protein 1e-36 55
z1217 CAD33787.1 Z1217 protein Not tested PAI I 536 Protein 2e-36 55
c5152 NP_757000.1 radC-like protein yeeS Not tested PAI II CFT073 Protein 1e-36 55
yeeS CAI43901.1 YeeS protein Not tested LEE Protein 2e-36 55
yeeS CAI43846.1 YeeS protein Not tested LEE Protein 2e-36 55
yeeS ADD91702.1 YeeS Not tested PAI-I AL862 Protein 2e-36 55
unnamed AAL08475.1 unknown Not tested SRL Protein 2e-36 55
ECO103_3589 YP_003223446.1 radC-like protein YeeS Not tested LEE Protein 5e-36 54
unnamed CAD66203.1 hypothetical protein Not tested PAI III 536 Protein 3e-36 54
unnamed AAL67345.1 intergenic-region protein Not tested PAI II CFT073 Protein 1e-35 54
yeeS CAE85201.1 YeeS protein Not tested PAI V 536 Protein 7e-36 54
Z1657 NP_287160.1 RadC family DNA repair protein Not tested TAI Protein 1e-34 53
yeeS NP_838484.1 RADC family DNA repair protein Not tested SHI-1 Protein 4e-35 53
yeeS NP_708770.1 RADC family DNA repair protein Not tested SHI-1 Protein 4e-35 53
aec73 AAW51756.1 Aec73 Not tested AGI-3 Protein 8e-36 53
VC0510 NP_230161.1 DNA repair protein RadC-like protein Not tested VSP-2 Protein 8e-27 52
VC0395_A1383 YP_001217326.1 DNA repair protein RadC Not tested VPI-2 Protein 4e-32 50
VC1786 NP_231421.1 DNA repair protein RadC Not tested VPI-2 Protein 4e-32 50
VPI2_0034 ACA01849.1 DNA repair protein RadC Not tested VPI-2 Protein 1e-32 50
radC AAN62140.1 putative DNA repair protein RadC Not tested PAGI-2(C) Protein 2e-26 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ETAF_2489 YP_005700083.1 DNA repair protein RadC family protein VFG1528 Protein 9e-37 55
ETAF_2489 YP_005700083.1 DNA repair protein RadC family protein VFG1617 Protein 9e-37 55
ETAF_2489 YP_005700083.1 DNA repair protein RadC family protein VFG1066 Protein 7e-37 55
ETAF_2489 YP_005700083.1 DNA repair protein RadC family protein VFG1678 Protein 1e-36 54
ETAF_2489 YP_005700083.1 DNA repair protein RadC family protein VFG0660 Protein 1e-35 53
ETAF_2489 YP_005700083.1 DNA repair protein RadC family protein VFG1119 Protein 1e-32 50